Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1736

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1736: 10104 - K01593 DDC aromatic-L-amino-acid decarboxylase, at 78147 to 80608 10104 mRNA_1737: 10105 - KOG1021 Acetylglucosaminyltransferase EXT1/exostosin 1, at 80884 to 82688 10105

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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77,176 - 1.1
77,221 - -1.5
77,224 - 0.7
77,234 + -0.0
77,241 + -1.5
77,242 + 1.8
77,251 + 0.1
77,251 + 1.6
77,256 + 1.7
77,260 - 0.1
77,261 + 0.0
77,262 + -0.8
77,262 - -0.2
77,291 + 3.2
77,294 - 3.0
77,295 - -0.0
77,324 + 0.1
77,334 - -0.7
77,339 - 1.4
77,345 - 1.4
77,350 - 1.1
77,350 + 1.2
77,351 + 2.5
77,353 + 0.1
77,360 + -0.4
77,373 - -1.6
77,374 - -0.2
77,386 + 1.8
77,394 - 0.3
77,396 + -1.3
77,399 - 0.2
77,400 + -0.1
77,400 + -0.1
77,407 + 0.4
77,412 - 0.5
77,421 + 0.1
77,422 + -0.4
77,425 + -0.8
77,427 + 0.0
77,427 + -0.5
77,434 + -0.8
77,717 + -2.6
77,722 + -0.1
77,976 - 1.7
78,120 - -2.7
78,287 - -0.3
78,617 + 10104 mRNA_1736 0.19 0.5
78,775 - 10104 mRNA_1736 0.26 1.3
78,889 - 10104 mRNA_1736 0.30 2.3
78,898 - 10104 mRNA_1736 0.31 -0.9
78,927 - 10104 mRNA_1736 0.32 0.9
79,189 + 10104 mRNA_1736 0.42 3.7
79,335 + 10104 mRNA_1736 0.48 0.8
79,343 - 10104 mRNA_1736 0.49 0.3
79,374 - 10104 mRNA_1736 0.50 -0.8
79,382 + 10104 mRNA_1736 0.50 -1.9
79,606 - 10104 mRNA_1736 0.59 -1.6
80,622 - -0.4
80,625 - -0.2
80,669 - -0.5
80,789 + 0.8
80,790 - 0.7
80,795 - 0.6
80,803 - 2.0
80,842 + -0.8
80,970 + 1.2
81,115 + 10105 mRNA_1737 0.13 1.1
81,237 - 10105 mRNA_1737 0.20 -0.6
81,252 + 10105 mRNA_1737 0.20 1.5
81,257 + 10105 mRNA_1737 0.21 0.7
81,292 + 10105 mRNA_1737 0.23 -1.1