Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1725

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1725: 10093 - KOG2343 Glucose-repressible protein and related proteins, at 46697 to 49542 10093 mRNA_1726: 10094 - BLAST Protein priA [Grifola frondosa], at 50052 to 51969 10094

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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46,215 - -1.0
46,337 - -0.4
46,352 + -1.0
46,483 + 1.1
46,494 + -0.2
46,496 - 0.1
46,503 + -1.1
46,568 + 1.7
46,657 - 0.8
46,783 + -0.1
46,789 + -0.3
46,803 + 0.7
46,812 - -3.3
46,813 + -0.6
46,833 - 0.8
46,874 - 0.7
46,888 - 1.3
46,895 + -1.7
46,898 - -0.7
46,925 - -0.7
46,939 - -0.4
47,113 + 10093 mRNA_1725 0.15 -1.3
47,200 - 10093 mRNA_1725 0.18 1.6
47,412 + 10093 mRNA_1725 0.25 0.1
47,548 + 10093 mRNA_1725 0.30 -2.4
47,682 + 10093 mRNA_1725 0.35 -0.1
47,695 - 10093 mRNA_1725 0.35 1.9
47,703 - 10093 mRNA_1725 0.35 0.2
47,731 + 10093 mRNA_1725 0.36 0.4
47,832 + 10093 mRNA_1725 0.40 0.7
48,061 - 10093 mRNA_1725 0.48 0.3
48,202 - 10093 mRNA_1725 0.53 1.9
48,204 - 10093 mRNA_1725 0.53 -0.8
48,225 + 10093 mRNA_1725 0.54 0.7
48,367 + 10093 mRNA_1725 0.59 -0.1
48,389 - 10093 mRNA_1725 0.59 0.1
48,430 + 10093 mRNA_1725 0.61 0.8
48,440 - 10093 mRNA_1725 0.61 -0.4
48,446 + 10093 mRNA_1725 0.61 -0.1
48,446 + 10093 mRNA_1725 0.61 0.7
48,532 - 10093 mRNA_1725 0.64 0.0
48,535 + 10093 mRNA_1725 0.65 1.5
48,562 - 10093 mRNA_1725 0.66 0.4
48,573 + 10093 mRNA_1725 0.66 -0.1
48,808 - 10093 mRNA_1725 0.74 -0.2
48,878 - 10093 mRNA_1725 0.77 0.3
48,944 - 10093 mRNA_1725 0.79 1.2
49,016 + 10093 mRNA_1725 0.81 0.9
49,111 + 10093 mRNA_1725 0.85 0.9
49,429 + -0.5
49,516 - -0.2
49,581 + -0.3
49,653 + 0.4
49,738 - -0.6
49,995 + -0.2
49,999 - 0.7
50,094 + 0.7
50,176 + -0.0
50,523 - 10094 mRNA_1726 0.25 -0.4