Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1723

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1723: 10091 - KOG4157 beta-1,6-N-acetylglucosaminyltransferase, contains WSC domain, at 38655 to 42471 10091 mRNA_1724: 10092 - K08827 PRPF4B serine/threonine-protein kinase PRP4, at 43091 to 44788 10092

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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37,660 + 1.0
37,703 - 1.6
37,717 - 2.1
37,735 - 1.2
37,831 - 0.2
37,837 + -1.0
37,921 - 1.5
37,933 - 0.0
37,934 + 0.7
37,934 + -1.3
37,938 + 0.2
37,950 - -1.2
37,951 + 1.7
37,984 - -0.0
38,063 + 1.1
38,063 - 2.1
38,074 - 2.0
38,075 - 1.4
38,083 + 1.1
38,091 - -0.7
38,140 - 0.3
38,248 - -0.2
38,249 - 1.7
38,366 + 2.5
38,384 + 0.2
38,409 + -0.5
38,409 + 0.4
38,929 - -0.1
38,939 + 2.5
38,940 - -1.5
38,963 + -0.0
39,081 + 10091 mRNA_1723 0.11 0.8
39,111 + 10091 mRNA_1723 0.12 1.6
39,362 - 10091 mRNA_1723 0.19 -1.6
39,532 + 10091 mRNA_1723 0.23 0.2
39,581 + 10091 mRNA_1723 0.24 0.2
39,873 + 10091 mRNA_1723 0.32 -0.9
40,035 - 10091 mRNA_1723 0.36 0.3
40,066 - 10091 mRNA_1723 0.37 -0.9
40,393 + 10091 mRNA_1723 0.46 0.7
40,399 + 10091 mRNA_1723 0.46 0.0
40,404 - 10091 mRNA_1723 0.46 -0.4
40,421 + 10091 mRNA_1723 0.46 1.9
40,498 - 10091 mRNA_1723 0.48 1.3
40,691 + 10091 mRNA_1723 0.53 0.9
41,019 - 10091 mRNA_1723 0.62 -0.0
41,144 - 10091 mRNA_1723 0.65 -0.3
41,221 - 10091 mRNA_1723 0.67 1.9
41,286 + 10091 mRNA_1723 0.69 2.4
41,447 + 10091 mRNA_1723 0.73 -0.6
41,552 + 10091 mRNA_1723 0.76 -1.1
41,624 + 10091 mRNA_1723 0.78 2.4
41,733 - 10091 mRNA_1723 0.81 2.0
41,872 + 10091 mRNA_1723 0.84 -0.7
41,929 + 10091 mRNA_1723 0.86 0.6
41,957 - 10091 mRNA_1723 0.87 0.4
41,973 + 10091 mRNA_1723 0.87 -1.7
42,146 + -0.6
42,171 + -0.5
42,198 + -2.0
42,285 - -0.0
42,287 - 2.9
42,298 + -0.1
42,311 + 2.5
42,354 - 1.6
42,357 - 1.1
42,445 - -0.3
42,592 - -1.1
42,597 + 0.3
42,614 - -1.7
42,623 + 2.1
42,627 - 2.0
42,632 + 1.2
42,637 - 1.1
42,637 - -0.1
42,638 + 0.0
42,644 + -0.0
42,650 + -1.1
42,652 - 0.3
42,660 + -1.9
42,677 - -0.6
42,684 - 0.5
42,714 - -1.2
42,717 + -0.2
42,729 + -2.0
42,737 - -0.5
42,769 - 1.5
42,778 - 2.0
42,782 + 0.3
42,788 + 1.3
42,808 - 1.9
42,824 - 0.9
42,825 + -0.2
42,825 - -1.8
42,826 - -1.2
42,829 + 0.3
42,832 + 0.1
42,839 + 1.6
42,845 - -2.2
42,846 - 1.0
42,847 - 0.1
42,847 - 0.8
42,868 + 0.1
42,874 + 0.4
42,901 + 0.5
42,912 - 0.8
42,923 - 1.5
42,925 - -0.4
42,999 - 1.9
43,027 - -0.7
43,050 + 1.3