Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1721

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1720: 10088 - HMMPfam-Zinc finger, C2H2 type-PF00096,ProSitePatterns-Zinc finger C2H2 type domain signature.-PS00028,ProSiteProfiles-Zinc finger C2H2 type domain profile.-PS50157,SUPERFAMILY--SSF57667, at 29211 to 32060 10088 mRNA_1721: 10089 - K11483 HOS2 histone deacetylase HOS2, at 32428 to 34334 10089 mRNA_1722: 10090 - KOG0065 Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily, at 34875 to 37390 10090

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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31,450 - 10088 mRNA_1720 0.79 -1.3
31,473 + 10088 mRNA_1720 0.79 0.8
31,607 + 10088 mRNA_1720 0.84 2.5
31,620 - 10088 mRNA_1720 0.85 0.1
31,762 + 10088 mRNA_1720 0.90 0.8
31,878 - -0.4
32,031 - 0.2
32,173 + 1.9
32,190 - 0.7
32,333 + -0.3
32,336 - -0.9
32,337 - -1.2
32,350 + 0.2
32,350 - -0.6
32,354 + 0.5
32,355 - 0.3
32,356 + -0.6
32,357 + 2.0
32,362 + -0.3
32,547 - 0.1
32,588 + -0.5
32,822 - 10089 mRNA_1721 0.21 0.2
32,823 - 10089 mRNA_1721 0.21 -1.5
32,873 - 10089 mRNA_1721 0.23 0.5
33,180 - 10089 mRNA_1721 0.39 1.3
33,187 + 10089 mRNA_1721 0.40 1.5
33,822 - 10089 mRNA_1721 0.73 0.5
33,824 - 10089 mRNA_1721 0.73 -1.4
34,606 + 0.8
34,704 + 2.7
34,710 + 0.3
34,717 + -1.4
34,753 - 1.4
34,868 + 0.1
34,948 - 1.0
35,013 - 0.9
35,040 + 0.3
35,159 - 10090 mRNA_1722 0.11 2.4
35,168 + 10090 mRNA_1722 0.12 -0.0