Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1709

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3855 to 4476 10076 mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5028 to 7438 10077 mRNA_1710: 10078 - Hypothetical Protein, at 7999 to 8750 10078

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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4,055 + 10076 mRNA_1708 0.32 1.3
4,063 - 10076 mRNA_1708 0.33 -0.7
4,072 - 10076 mRNA_1708 0.35 0.1
4,093 - 10076 mRNA_1708 0.38 -0.1
4,363 - 10076 mRNA_1708 0.82 -0.3
4,363 - 10076 mRNA_1708 0.82 0.5
4,421 - -0.2
4,425 - 0.8
4,425 + 1.0
4,432 + 0.5
4,432 + 0.3
4,482 - 0.3
4,533 - 2.7
4,540 + -0.2
4,567 - -0.7
4,597 + -0.4
4,702 + 2.4
4,933 - 0.4
4,939 - -1.7
5,001 - -1.8
5,089 - -1.9
5,089 - -1.1
5,092 + -0.9
5,117 + 0.6
5,290 + 10077 mRNA_1709 0.11 -0.1
5,296 + 10077 mRNA_1709 0.11 -0.4
5,365 + 10077 mRNA_1709 0.14 2.1
5,371 + 10077 mRNA_1709 0.14 0.6
5,372 + 10077 mRNA_1709 0.14 0.8
5,424 + 10077 mRNA_1709 0.16 1.2
5,513 - 10077 mRNA_1709 0.20 -0.3
5,634 - 10077 mRNA_1709 0.25 -1.1
5,659 + 10077 mRNA_1709 0.26 1.7
5,681 - 10077 mRNA_1709 0.27 2.7
5,681 - 10077 mRNA_1709 0.27 2.4
5,694 - 10077 mRNA_1709 0.28 0.7
5,726 + 10077 mRNA_1709 0.29 0.4
5,809 + 10077 mRNA_1709 0.32 -0.6
5,926 + 10077 mRNA_1709 0.37 -0.7
6,007 + 10077 mRNA_1709 0.41 1.5
6,120 + 10077 mRNA_1709 0.45 1.6
6,140 + 10077 mRNA_1709 0.46 1.3
6,238 - 10077 mRNA_1709 0.50 0.2
6,244 - 10077 mRNA_1709 0.50 3.5
6,245 + 10077 mRNA_1709 0.50 -0.5
6,249 + 10077 mRNA_1709 0.51 0.6
6,318 + 10077 mRNA_1709 0.54 0.3
6,468 - 10077 mRNA_1709 0.60 2.2
6,474 + 10077 mRNA_1709 0.60 0.7
6,541 + 10077 mRNA_1709 0.63 1.4
6,563 + 10077 mRNA_1709 0.64 0.9
6,583 + 10077 mRNA_1709 0.64 0.8
6,590 + 10077 mRNA_1709 0.65 2.6
6,688 + 10077 mRNA_1709 0.69 0.8
6,704 + 10077 mRNA_1709 0.70 1.7
7,174 + 10077 mRNA_1709 0.89 0.8
7,276 + 1.2
7,408 + -1.4
7,596 - 1.6
7,805 + 1.0
7,859 + 0.5
7,859 + 1.1
7,901 - 1.0
7,922 + 0.2
7,992 - 1.0
8,039 + 0.4
8,042 - -0.0
8,047 + 1.3
8,068 + 0.5
8,234 + 10078 mRNA_1710 0.31 0.5
8,331 + 10078 mRNA_1710 0.44 -1.8
8,341 - 10078 mRNA_1710 0.45 1.2