Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1708

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1708: 10076 - HMMPfam-MYND finger-PF01753,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 3855 to 4476 10076 mRNA_1709: 10077 - K16302 CNNM metal transporter CNNM, at 5028 to 7438 10077

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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2,923 + 2.0
3,038 - -0.1
3,062 + -0.5
3,198 - 0.2
3,200 + 0.2
3,208 + -0.2
3,333 + 0.3
3,347 - -0.7
3,348 - -0.4
3,381 + -0.9
3,459 + 1.6
3,634 - 1.8
3,791 + -1.4
3,839 - 0.5
3,866 + 1.7
3,931 - 10076 mRNA_1708 0.12 -0.2
4,055 + 10076 mRNA_1708 0.32 1.3
4,063 - 10076 mRNA_1708 0.33 -0.7
4,072 - 10076 mRNA_1708 0.35 0.1
4,093 - 10076 mRNA_1708 0.38 -0.1
4,363 - 10076 mRNA_1708 0.82 -0.3
4,363 - 10076 mRNA_1708 0.82 0.5
4,421 - -0.2
4,425 - 0.8
4,425 + 1.0
4,432 + 0.5
4,432 + 0.3
4,482 - 0.3
4,533 - 2.7
4,540 + -0.2
4,567 - -0.7
4,597 + -0.4
4,702 + 2.4
4,933 - 0.4
4,939 - -1.7
5,001 - -1.8
5,089 - -1.9
5,089 - -1.1
5,092 + -0.9
5,117 + 0.6
5,290 + 10077 mRNA_1709 0.11 -0.1
5,296 + 10077 mRNA_1709 0.11 -0.4
5,365 + 10077 mRNA_1709 0.14 2.1
5,371 + 10077 mRNA_1709 0.14 0.6
5,372 + 10077 mRNA_1709 0.14 0.8
5,424 + 10077 mRNA_1709 0.16 1.2