Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1706

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1706: 10074 - K08286 E2.7.11.- protein-serine/threonine kinase, at 343 to 1191 10074 mRNA_1707: 10075 - BLAST related to SNF1-related protein kinase KIN10 [Melanop..., at 1188 to 2835 10075

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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26 + 0.6
27 + 0.9
28 + 0.3
31 + 0.3
31 + 1.6
41 + 1.2
66 + 0.3
72 - 1.8
72 - -0.1
93 + -0.1
104 + -0.4
105 + 0.0
108 + 0.4
120 - 0.0
128 + 0.4
135 - -0.8
136 + -0.5
136 - 1.3
137 - 0.7
137 - -1.9
138 + -0.0
139 + 1.5
141 - -0.3
150 - 1.5
151 - 0.4
155 + 0.9
155 + -0.1
156 + 1.4
158 + -2.4
173 - -1.0
175 + 2.0
180 - 2.3
215 + 0.6
220 - -0.5
234 + 2.5
254 - 1.1
283 + 0.8
304 + 2.6
322 + 0.1
324 + 0.4
427 + 0.3
453 + 10074 mRNA_1706 0.13 -0.1
465 - 10074 mRNA_1706 0.14 1.0
482 + 10074 mRNA_1706 0.16 0.2
493 - 10074 mRNA_1706 0.18 2.1
647 + 10074 mRNA_1706 0.36 -0.3
683 - 10074 mRNA_1706 0.40 0.1
809 + 10074 mRNA_1706 0.55 0.2
842 - 10074 mRNA_1706 0.59 -0.8
844 + 10074 mRNA_1706 0.59 0.9
848 - 10074 mRNA_1706 0.59 2.1
902 + 10074 mRNA_1706 0.66 -0.7
949 - 10074 mRNA_1706 0.71 0.8
949 - 10074 mRNA_1706 0.71 -0.3
950 + 10074 mRNA_1706 0.71 2.4
974 - 10074 mRNA_1706 0.74 -1.4
1,016 + 10074 mRNA_1706 0.79 -0.0
1,065 + 10074 mRNA_1706 0.85 -0.8
1,118 + -1.0
1,142 + -0.1
1,155 + 0.6
1,272 - 1.1
1,281 + 0.1
1,573 + 10075 mRNA_1707 0.23 -0.1
1,625 + 10075 mRNA_1707 0.27 3.5
1,625 + 10075 mRNA_1707 0.27 -0.0
1,628 + 10075 mRNA_1707 0.27 0.8
1,646 + 10075 mRNA_1707 0.28 -0.8
1,649 - 10075 mRNA_1707 0.28 1.4
1,680 + 10075 mRNA_1707 0.30 0.4
1,781 + 10075 mRNA_1707 0.36 0.2
1,926 + 10075 mRNA_1707 0.45 -0.7
1,996 + 10075 mRNA_1707 0.49 2.4
2,005 - 10075 mRNA_1707 0.50 -0.9
2,010 - 10075 mRNA_1707 0.50 1.8
2,033 + 10075 mRNA_1707 0.51 0.1
2,068 + 10075 mRNA_1707 0.53 0.7
2,076 + 10075 mRNA_1707 0.54 1.3