Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1696

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1695: 10063 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 916247 to 917394 10063 mRNA_1696: 10064 - BLAST membrane-associating domain protein [Rhizoctonia sola..., at 917668 to 919209 10064 mRNA_1697: 10065 - BLAST Pro41 protein, putative [Rhizoctonia solani AG-3 Rhs1AP], at 919612 to 920343 10065

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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916,691 - 10063 mRNA_1695 0.39 1.7
916,692 + 10063 mRNA_1695 0.39 0.1
916,901 + 10063 mRNA_1695 0.57 0.4
916,979 + 10063 mRNA_1695 0.64 -1.7
917,309 - 1.3
917,316 + -0.5
917,592 - 1.9
917,682 - 2.1
917,725 - 1.1
918,024 + 10064 mRNA_1696 0.23 1.8
918,129 + 10064 mRNA_1696 0.30 -1.6
918,218 - 10064 mRNA_1696 0.36 -0.0
918,324 - 10064 mRNA_1696 0.43 0.1
918,783 + 10064 mRNA_1696 0.72 0.2
918,954 + 10064 mRNA_1696 0.83 0.9
918,954 + 10064 mRNA_1696 0.83 1.3
919,066 + 0.1
919,203 - -0.7
919,222 + -0.1
919,227 - 0.5
919,291 - -0.6
919,292 + -1.6
919,292 + 1.6
919,499 - 0.6
919,696 - 10065 mRNA_1697 0.11 2.7
919,799 + 10065 mRNA_1697 0.26 0.4
919,996 + 10065 mRNA_1697 0.52 -1.1
920,132 - 10065 mRNA_1697 0.71 0.2
920,155 + 10065 mRNA_1697 0.74 -1.7