Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1689

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1688: 10056 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 895835 to 896742 10056 mRNA_1689: 10057 - KOG1286 Amino acid transporters, at 897050 to 899959 10057 mRNA_1690: 10058 - BLAST putative transmembrane protein [Rhizoctonia solani 123E], at 900281 to 902715 10058

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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896,599 - 10056 mRNA_1688 0.84 -1.3
896,732 - -0.3
896,886 - -0.2
896,912 - -0.0
896,970 - 0.2
897,083 - 3.7
897,170 - -0.0
897,333 + 0.8
897,355 + 10057 mRNA_1689 0.10 -0.1
897,468 - 10057 mRNA_1689 0.14 -1.1
897,532 + 10057 mRNA_1689 0.17 3.2
897,723 - 10057 mRNA_1689 0.23 -0.1
897,769 + 10057 mRNA_1689 0.25 -1.2
897,845 - 10057 mRNA_1689 0.27 1.4
897,870 + 10057 mRNA_1689 0.28 1.2
897,920 + 10057 mRNA_1689 0.30 0.7
897,929 - 10057 mRNA_1689 0.30 2.1
897,935 + 10057 mRNA_1689 0.30 -2.0
897,949 - 10057 mRNA_1689 0.31 -1.0
897,968 - 10057 mRNA_1689 0.32 0.2
897,977 + 10057 mRNA_1689 0.32 0.2
897,998 + 10057 mRNA_1689 0.33 0.4
898,047 - 10057 mRNA_1689 0.34 -0.6
898,059 - 10057 mRNA_1689 0.35 0.9
898,120 + 10057 mRNA_1689 0.37 0.7
898,132 - 10057 mRNA_1689 0.37 -0.0
898,179 - 10057 mRNA_1689 0.39 0.4
898,264 + 10057 mRNA_1689 0.42 0.8
898,346 - 10057 mRNA_1689 0.45 2.0
898,535 - 10057 mRNA_1689 0.51 0.6
898,676 - 10057 mRNA_1689 0.56 0.4
898,683 + 10057 mRNA_1689 0.56 2.4
898,962 - 10057 mRNA_1689 0.66 1.2
898,971 - 10057 mRNA_1689 0.66 -0.8
898,984 - 10057 mRNA_1689 0.66 0.1
899,401 - 10057 mRNA_1689 0.81 3.4
899,708 + 0.7
899,864 + -0.2
900,288 + -0.1
900,723 - 10058 mRNA_1690 0.18 0.2