Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1686

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1685: 10053 - Hypothetical Protein, at 885302 to 886420 10053 mRNA_1686: 10054 - BLAST putative protein [Melanopsichium pennsylvanicum 4], at 887231 to 890283 10054 mRNA_1687: 10055 - K02969 RP-S20e, RPS20 small subunit ribosomal protein S20e, at 891073 to 891798 10055

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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886,384 + 0.9
886,407 - 0.0
886,413 + -0.6
886,418 + 0.0
886,458 + -1.3
886,564 - -1.1
886,567 - 0.1
886,588 + 0.2
886,622 + -1.6
886,627 - -0.5
886,645 + 0.6
886,673 + 0.3
886,702 + 0.6
886,715 - 0.4
886,742 + 1.3
886,743 - 0.9
886,744 - 0.5
886,859 + -0.5
886,878 - -0.1
886,881 + -0.7
886,884 - 2.0
886,887 + -0.3
886,922 + 1.1
886,926 - -0.1
886,939 - -0.4
887,032 - -0.3
887,057 - -1.2
887,071 - -0.3
887,470 - -1.8
887,812 - 10054 mRNA_1686 0.19 0.0
888,201 - 10054 mRNA_1686 0.32 -1.8
888,674 - 10054 mRNA_1686 0.47 1.1
890,068 - -1.1
890,232 + -0.4
890,269 - -0.0
890,279 - -0.8
890,425 + 0.3
890,536 - 0.7
890,570 - -0.2
890,576 + -0.0
890,617 - 1.3
890,691 - -0.3
890,698 - 1.7
890,701 - 0.3
890,712 + 0.8
890,719 + -0.3
890,723 - -1.1
890,730 + 0.5
890,737 + 0.6
890,747 + 0.5
890,750 - 0.3
890,774 + -0.8