Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1679

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1678: 10046 - K09498 CCT6 T-complex protein 1 subunit zeta, at 870469 to 873019 10046 mRNA_1679: 10047 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 873109 to 875707 10047 mRNA_1680: 10048 - BLAST cyclin-like F-box domain containing protein [Rhod..., at 876384 to 878826 10048

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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873,291 - -2.5
873,475 + 10047 mRNA_1679 0.14 0.6
873,665 + 10047 mRNA_1679 0.21 0.3
874,004 + 10047 mRNA_1679 0.34 0.8
874,021 - 10047 mRNA_1679 0.35 -1.8
874,040 - 10047 mRNA_1679 0.36 0.5
874,119 + 10047 mRNA_1679 0.39 1.8
874,342 + 10047 mRNA_1679 0.47 1.0
874,828 - 10047 mRNA_1679 0.66 3.0
874,897 + 10047 mRNA_1679 0.69 1.1
875,182 + 10047 mRNA_1679 0.80 1.4
875,198 - 10047 mRNA_1679 0.80 -0.7
875,277 + 10047 mRNA_1679 0.83 -0.9
875,388 - 10047 mRNA_1679 0.88 0.4
875,470 + 1.8
875,488 + -0.0
875,722 - 0.2
875,731 + 1.0
875,901 - 2.3
875,939 - -1.1
876,033 - 1.2
876,159 - -1.8
876,375 - -2.1
876,383 + 1.3
876,601 - 1.2
876,643 - 10048 mRNA_1680 0.11 0.3