Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1669

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1668: 10036 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848567 to 849208 10036 mRNA_1669: 10037 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849506 to 850957 10037 mRNA_1670: 10038 - K15918 GLYK D-glycerate 3-kinase, at 851334 to 852644 10038

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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848,543 - 3.9
848,582 - 1.0
848,869 - 10036 mRNA_1668 0.47 1.6
849,033 - 10036 mRNA_1668 0.73 -0.2
849,281 + -0.2
849,596 + -2.2
849,763 + 10037 mRNA_1669 0.18 -1.5
850,040 + 10037 mRNA_1669 0.37 0.2
850,462 - 10037 mRNA_1669 0.66 0.4
850,727 - 10037 mRNA_1669 0.84 0.3
850,766 + 10037 mRNA_1669 0.87 0.7
850,921 + -2.0
851,019 - 1.1
851,037 - -0.7
851,047 - 0.2
851,047 - -2.6
851,049 + 0.9
851,055 + -0.1
851,062 - 1.1
851,063 - 0.4
851,082 - -0.3
851,085 + 1.8
851,092 + -0.3
851,098 - 0.3
851,099 - 0.4
851,105 + 1.0
851,142 + -2.7
851,186 + 0.2
851,343 + 1.0
851,344 + -1.0
851,346 - 0.2
851,452 + -0.5
851,460 - -1.4
851,670 + 10038 mRNA_1670 0.26 0.6
851,738 - 10038 mRNA_1670 0.31 0.9
851,787 - 10038 mRNA_1670 0.35 -1.3