Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1668

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1667: 10035 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 842295 to 847609 10035 mRNA_1668: 10036 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848567 to 849208 10036 mRNA_1669: 10037 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 849506 to 850957 10037

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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847,638 + 1.2
847,640 - -0.5
847,668 + 2.0
847,740 - 1.8
847,780 - -0.6
847,949 + -0.2
847,954 + -0.8
847,961 - 2.6
847,970 - 0.2
848,100 + -1.0
848,116 - -1.4
848,128 - 0.5
848,225 - 3.1
848,242 + -0.7
848,247 - -0.0
848,248 + 0.8
848,250 - -1.3
848,258 - 1.0
848,269 - 1.9
848,279 + 0.5
848,380 + 0.6
848,392 + 0.4
848,394 - 0.7
848,394 + -0.2
848,406 - 1.1
848,418 - -1.4
848,543 - 3.9
848,582 - 1.0
848,869 - 10036 mRNA_1668 0.47 1.6
849,033 - 10036 mRNA_1668 0.73 -0.2
849,281 + -0.2
849,596 + -2.2
849,763 + 10037 mRNA_1669 0.18 -1.5
850,040 + 10037 mRNA_1669 0.37 0.2