Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1667

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1666: 10034 - HMMPfam-Nucleolar protein 12 (25kDa)-PF09805, at 840920 to 841915 10034 mRNA_1667: 10035 - K11527 K11527 two-component system, sensor histidine kinase and response regulator, at 842295 to 847609 10035 mRNA_1668: 10036 - HMMPfam-Acetyltransferase (GNAT) family-PF00583,ProSiteProfiles-Gcn5-related N-acetyltransferase (GNAT) domain profile.-PS51186,SUPERFAMILY--SSF55729, at 848567 to 849208 10036

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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842,070 + -1.4
842,149 + -0.9
842,225 + -0.0
842,641 + 0.5
843,229 + 10035 mRNA_1667 0.18 0.9
843,257 - 10035 mRNA_1667 0.18 -1.6
843,695 - 10035 mRNA_1667 0.26 -0.0
843,818 - 10035 mRNA_1667 0.29 0.0
843,956 - 10035 mRNA_1667 0.31 1.3
844,439 + 10035 mRNA_1667 0.40 0.3
844,560 - 10035 mRNA_1667 0.43 -1.1
844,712 + 10035 mRNA_1667 0.45 -0.9
844,986 - 10035 mRNA_1667 0.51 -0.3
845,166 + 10035 mRNA_1667 0.54 -0.7
845,243 + 10035 mRNA_1667 0.55 0.9
845,294 + 10035 mRNA_1667 0.56 1.8
846,035 - 10035 mRNA_1667 0.70 -0.1
846,054 - 10035 mRNA_1667 0.71 0.4
846,152 - 10035 mRNA_1667 0.73 -0.7
846,153 + 10035 mRNA_1667 0.73 -1.3
846,192 - 10035 mRNA_1667 0.73 0.6
846,326 - 10035 mRNA_1667 0.76 -0.1
846,329 + 10035 mRNA_1667 0.76 0.1
846,478 - 10035 mRNA_1667 0.79 1.5
846,752 - 10035 mRNA_1667 0.84 0.2
846,915 - 10035 mRNA_1667 0.87 -0.5
847,097 - -0.7
847,359 + 2.7
847,638 + 1.2
847,640 - -0.5
847,668 + 2.0
847,740 - 1.8
847,780 - -0.6
847,949 + -0.2
847,954 + -0.8
847,961 - 2.6
847,970 - 0.2
848,100 + -1.0
848,116 - -1.4
848,128 - 0.5
848,225 - 3.1
848,242 + -0.7
848,247 - -0.0
848,248 + 0.8
848,250 - -1.3
848,258 - 1.0
848,269 - 1.9
848,279 + 0.5
848,380 + 0.6
848,392 + 0.4
848,394 - 0.7
848,394 + -0.2
848,406 - 1.1
848,418 - -1.4
848,543 - 3.9
848,582 - 1.0