Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1649

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1648: 10016 - K11436 PRMT3 type I protein arginine methyltransferase, at 802282 to 804374 10016 mRNA_1649: 10017 - KOG2495 NADH-dehydrogenase (ubiquinone), at 804506 to 806689 10017 mRNA_1650: 10018 - KOG0254 Predicted transporter (major facilitator superfamily), at 807576 to 811155 10018

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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804,389 - -1.9
804,517 - -0.9
804,798 + 10017 mRNA_1649 0.13 -0.5
804,861 - 10017 mRNA_1649 0.16 -1.2
805,017 - 10017 mRNA_1649 0.23 -0.4
805,601 + 10017 mRNA_1649 0.50 1.3
805,711 - 10017 mRNA_1649 0.55 -0.2
805,825 - 10017 mRNA_1649 0.60 0.6
805,838 + 10017 mRNA_1649 0.61 -1.2
806,458 + 10017 mRNA_1649 0.89 0.1
806,742 - 0.1
806,759 - 0.7
806,760 + 2.4
806,761 - -1.0
806,770 + 0.1
806,801 + 1.5
806,803 - 0.5
806,819 + -0.0
806,896 + 1.8
806,914 + -0.9
806,926 + 0.3
806,992 - 0.4
807,022 + -1.1
807,087 + -0.1
807,097 + -2.7
807,099 + 0.2
807,123 - 1.6
807,126 - 0.3
807,132 + -0.1
807,141 + -0.1
807,181 - 0.8
807,185 + 1.7
807,190 - 0.3
807,192 - 0.2
807,194 - -1.3
807,200 - -0.5
807,201 + 2.9
807,210 + -1.9
807,214 - 0.8
807,258 - 0.2
807,261 + 2.7
807,264 - -1.6
807,280 - 0.3
807,285 + 0.1
807,294 - 0.3
807,313 + 0.0
807,417 - 0.0
807,434 - 1.9
807,438 + 1.9
807,483 + -0.9
807,483 + 1.0
807,508 - -0.4
807,511 + 0.2
807,517 - -0.5
807,534 - -1.0