Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1644

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1643: 10011 - KOG2458 Endoplasmic reticulum protein EP58, contains filamin rod domain and KDEL motif, at 790426 to 792624 10011 mRNA_1644: 10012 - K00253 IVD, ivd isovaleryl-CoA dehydrogenase, at 792797 to 794915 10012 mRNA_1645: 10013 - Hypothetical Protein, at 795092 to 795670 10013

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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792,092 - 10011 mRNA_1643 0.76 -0.6
792,253 + 10011 mRNA_1643 0.83 1.3
792,274 - 10011 mRNA_1643 0.84 -0.1
792,291 - 10011 mRNA_1643 0.85 0.4
792,315 - 10011 mRNA_1643 0.86 0.0
792,558 - 0.1
792,575 + -0.8
792,683 + 1.9
792,703 + 0.9
792,714 + 0.4
792,715 - 1.1
792,746 - -0.4
792,874 - 0.6
792,876 - 0.7
792,878 + 0.4
792,879 - -0.1
792,902 - -0.6
792,903 - 1.8
793,005 + 0.8
793,054 - 10012 mRNA_1644 0.12 1.2
793,334 + 10012 mRNA_1644 0.25 -0.7
793,755 - 10012 mRNA_1644 0.45 -0.4
793,759 + 10012 mRNA_1644 0.45 -0.3
793,914 + 10012 mRNA_1644 0.53 -0.5
794,037 - 10012 mRNA_1644 0.59 1.3
794,054 + 10012 mRNA_1644 0.59 -1.0
794,251 - 10012 mRNA_1644 0.69 -0.9
794,371 + 10012 mRNA_1644 0.74 1.5
794,503 + 10012 mRNA_1644 0.81 -0.3
794,780 + 0.6
795,237 - 10013 mRNA_1645 0.25 0.1
795,797 + -1.5