Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1640

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1639: 10007 - K00164 OGDH, sucA 2-oxoglutarate dehydrogenase E1 component, at 779505 to 783057 10007 mRNA_1640: 10008 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 783774 to 785106 10008 mRNA_1641: 10009 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 785580 to 788144 10009

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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783,062 - 0.2
783,068 - -1.1
783,069 - -0.9
783,070 - -0.4
783,072 + 0.3
783,082 - -1.6
783,083 + -0.5
783,086 - 1.1
783,090 - 0.2
783,097 - 0.2
783,098 + 0.3
783,098 + 1.8
783,102 - -1.2
783,105 + 1.3
783,107 + 0.1
783,113 + 0.5
783,137 + -0.2
783,243 - -0.1
783,245 + 1.0
783,250 + -1.6
783,265 + -0.5
783,266 + 1.2
783,275 + -1.6
783,282 + -0.1
783,415 + 0.4
783,430 + 1.0
783,712 + -1.6
783,850 - -1.6
784,018 - 10008 mRNA_1640 0.18 -1.4
784,109 + 10008 mRNA_1640 0.25 -1.9
784,130 - 10008 mRNA_1640 0.27 1.4
784,272 - 10008 mRNA_1640 0.37 0.6
784,275 - 10008 mRNA_1640 0.38 -0.2
784,296 - 10008 mRNA_1640 0.39 1.3
784,314 - 10008 mRNA_1640 0.41 1.7
784,570 - 10008 mRNA_1640 0.60 -0.4
784,734 + 10008 mRNA_1640 0.72 -1.2
784,854 + 10008 mRNA_1640 0.81 0.7
784,903 + 10008 mRNA_1640 0.85 0.1
785,028 + 0.0
785,170 - 2.2
785,232 + 2.5
785,462 + -0.1
785,505 + 1.3
786,056 + 10009 mRNA_1641 0.19 0.3