Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1635

Experiments: YPD

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1635: 10003 - K18748 SSD1 protein SSD1, at 767214 to 771755 10003 mRNA_1636: 10004 - HMMPfam-Fungal Zn(2)-Cys(6) binuclear cluster domain-PF00172,ProSitePatterns-Zn(2)-C6 fungal-type DNA-binding domain signature.-PS00463,ProSiteProfiles-Zn(2)-C6 fungal-type DNA-binding domain profile.-PS50048,SMART-GAL4-like Zn(II)2Cys6 (or C6 zinc) binuclear cluster DNA-binding domain-SM00066,SUPERFAMILY--SSF57701, at 772019 to 773712 10004

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Per-strain Table

Position Strand Gene Sysname Fraction YPD
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766,315 + 0.5
766,328 - 0.7
766,600 + 0.3
766,603 + 1.3
766,908 - 1.9
766,909 + 1.4
766,909 + 0.7
767,051 + 1.5
767,053 - 0.7
767,178 - 0.4
767,189 - -0.1
767,966 + 10003 mRNA_1635 0.17 0.3
768,476 + 10003 mRNA_1635 0.28 0.1
768,483 - 10003 mRNA_1635 0.28 -1.9
769,727 + 10003 mRNA_1635 0.55 -1.3
769,771 + 10003 mRNA_1635 0.56 1.5
769,784 - 10003 mRNA_1635 0.57 -0.1
769,944 - 10003 mRNA_1635 0.60 -0.3
770,067 - 10003 mRNA_1635 0.63 0.7
770,394 - 10003 mRNA_1635 0.70 0.8
770,554 + 10003 mRNA_1635 0.74 -1.3
770,913 + 10003 mRNA_1635 0.81 1.6
770,994 - 10003 mRNA_1635 0.83 1.0
771,012 + 10003 mRNA_1635 0.84 1.7
771,034 + 10003 mRNA_1635 0.84 0.9
771,427 + -0.1
771,456 + 1.6
771,487 + 0.3
771,580 + -0.1
771,761 - -0.1
771,892 - -0.8
771,899 - -0.1
772,036 + 0.3
772,037 - 0.6
772,046 - 0.3
772,181 - -0.9
772,185 - -0.5
772,339 - 10004 mRNA_1636 0.19 2.5
772,355 + 10004 mRNA_1636 0.20 0.4
772,363 + 10004 mRNA_1636 0.20 -0.0
772,365 - 10004 mRNA_1636 0.20 1.3
772,447 + 10004 mRNA_1636 0.25 -0.2
772,488 - 10004 mRNA_1636 0.28 0.5
772,644 - 10004 mRNA_1636 0.37 -0.4