Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1602

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1601: 9969 - HMMPfam-Protein of unknown function (DUF1682)-PF07946,ProSiteProfiles-Prokaryotic membrane lipoprotein lipid attachment site profile.-PS51257, at 694292 to 695992 9969 mRNA_1602: 9970 - HMMPfam-Protein of unknown function (DUF2013)-PF09431, at 696270 to 698823 9970 mRNA_1603: 9971 - KOG2948 Predicted metal-binding protein, at 699316 to 700594 9971

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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695,387 - 9969 mRNA_1601 0.64 0.1
695,434 - 9969 mRNA_1601 0.67 -1.0
695,443 + 9969 mRNA_1601 0.68 0.1
695,456 - 9969 mRNA_1601 0.68 1.4
695,583 + 9969 mRNA_1601 0.76 -0.3
695,589 + 9969 mRNA_1601 0.76 -0.2
695,721 - 9969 mRNA_1601 0.84 -0.8
695,861 + -0.7
695,864 - -0.1
695,886 - -3.6
695,909 - 0.4
696,056 + 0.1
696,170 - -1.7
696,187 + 0.2
696,303 - 1.7
696,352 - -0.8
696,426 + 1.7
696,513 - 0.2
696,638 + 9970 mRNA_1602 0.14 0.4
696,736 - 9970 mRNA_1602 0.18 0.9
696,744 - 9970 mRNA_1602 0.19 0.3
697,021 - 9970 mRNA_1602 0.29 0.3
697,079 + 9970 mRNA_1602 0.32 1.5
697,084 + 9970 mRNA_1602 0.32 1.4
697,199 - 9970 mRNA_1602 0.36 1.0
697,364 - 9970 mRNA_1602 0.43 0.6
697,375 - 9970 mRNA_1602 0.43 2.0
697,389 - 9970 mRNA_1602 0.44 1.0
697,392 + 9970 mRNA_1602 0.44 0.9
697,445 - 9970 mRNA_1602 0.46 1.3
697,660 - 9970 mRNA_1602 0.54 1.2
697,751 - 9970 mRNA_1602 0.58 0.4
697,984 + 9970 mRNA_1602 0.67 -0.2
698,191 - 9970 mRNA_1602 0.75 0.2
698,211 - 9970 mRNA_1602 0.76 -0.1
698,368 + 9970 mRNA_1602 0.82 1.3
698,532 - 9970 mRNA_1602 0.89 0.8
698,655 + 1.2
698,675 - 0.3
698,681 - 0.3
698,924 - -0.1
698,972 - 1.1
698,973 - -0.0
698,975 - 0.0
698,997 - -0.6
699,272 - -0.1