Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1458

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1457: 9825 - K00549 metE 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, at 336305 to 339274 9825 mRNA_1458: 9826 - K17775 MDM34, MMM2 mitochondrial distribution and morphology protein 34, at 339999 to 342727 9826 mRNA_1459: 9827 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SMART-A Receptor for Ubiquitination Targets-SM00256,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 342894 to 344123 9827

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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339,024 + -2.1
339,287 + -4.2
339,288 + -0.8
339,292 - -3.3
339,307 - -1.4
339,425 - -1.4
339,444 - -0.2
339,466 - 0.3
339,471 - -0.4
339,471 - -0.9
339,471 - -2.2
339,473 - 0.4
339,473 - -0.4
339,474 + -1.0
339,477 + -2.2
339,481 + 1.1
339,483 + 1.1
339,485 + 0.2
339,488 - -2.3
339,490 + 0.2
339,494 - -0.3
339,495 + 0.3
339,496 - -0.4
339,594 - 1.8
339,623 + -1.4
339,670 - -0.5
339,672 - 0.1
339,679 + 1.5
339,681 + 0.5
339,777 - 0.1
339,788 - 2.1
339,795 + 0.8
339,808 - 1.4
339,811 - -0.2
339,815 - 0.3
339,822 + -0.1
339,979 + 1.8
341,528 - 9826 mRNA_1458 0.56 0.8
341,567 - 9826 mRNA_1458 0.57 -1.2
341,680 + 9826 mRNA_1458 0.62 -0.1
341,839 + 9826 mRNA_1458 0.67 -0.5
341,939 - 9826 mRNA_1458 0.71 -0.4
342,439 + 9826 mRNA_1458 0.89 1.3
343,440 + 9827 mRNA_1459 0.44 -2.2
343,440 - 9827 mRNA_1459 0.44 -0.2
343,674 + 9827 mRNA_1459 0.63 0.1
343,677 + 9827 mRNA_1459 0.64 -0.5
343,699 - 9827 mRNA_1459 0.65 0.1