Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1377

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1376: 9744 - HMMPfam-Helix-loop-helix DNA-binding domain-PF00010,ProSiteProfiles-Myc-type, basic helix-loop-helix (bHLH) domain profile.-PS50888,SUPERFAMILY--SSF47459, at 127099 to 128886 9744 mRNA_1377: 9745 - Hypothetical Protein, at 129264 to 129958 9745 mRNA_1378: 9746 - KOG2214 Predicted esterase of the alpha-beta hydrolase superfamily, at 130369 to 133964 9746

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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128,354 + 9744 mRNA_1376 0.70 0.2
128,510 - 9744 mRNA_1376 0.79 -0.6
128,804 - -0.5
128,965 + 0.1
129,101 + 0.7
129,109 - -0.3
129,110 + -0.0
129,118 + 1.1
129,119 - -1.1
129,127 + -1.2
129,135 + -0.3
129,160 + 0.0
129,394 + 9745 mRNA_1377 0.19 0.4
129,578 + 9745 mRNA_1377 0.45 -0.6
129,667 - 9745 mRNA_1377 0.58 0.5
129,680 + 9745 mRNA_1377 0.60 -0.0
129,690 + 9745 mRNA_1377 0.61 0.7
129,841 - 9745 mRNA_1377 0.83 0.3
129,858 - 9745 mRNA_1377 0.85 -0.6
129,965 - 3.4
129,981 - 0.6
129,996 + 0.7
129,996 - 0.9
130,156 - 0.7
130,289 - -3.0
130,290 - 0.5
130,296 + -0.1
130,311 - 0.5
130,405 - -1.0
130,412 + 0.6
130,419 - -1.6
130,421 + -0.1
130,424 - 0.0
130,694 - 0.6
130,715 - 1.0
130,733 + 9746 mRNA_1378 0.10 1.5