Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_1059

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_1058: 9426 - HMMPfam-Protein of unknown function (DUF1115)-PF06544,PIRSF--PIRSF038021,SUPERFAMILY--SSF54495, at 298923 to 300090 9426 mRNA_1059: 9427 - BLAST expressed protein [Cryptococcus neoformans var. neofo..., at 300871 to 301562 9427 mRNA_1060: 9428 - K01530 E3.6.3.1 phospholipid-translocating ATPase, at 301806 to 307768 9428

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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299,927 - 9426 mRNA_1058 0.86 0.3
299,927 - 9426 mRNA_1058 0.86 -0.9
300,002 + 0.1
300,087 - -0.5
300,088 + 0.8
300,097 + -0.1
300,104 - 0.5
300,110 - 0.2
300,114 - 0.7
300,125 + 0.0
300,126 + 0.4
300,286 + 0.5
300,699 - 0.1
300,705 - -1.0
300,955 - 9427 mRNA_1059 0.12 -0.9
300,969 - 9427 mRNA_1059 0.14 1.3
300,971 + 9427 mRNA_1059 0.14 -1.2
301,129 - 9427 mRNA_1059 0.37 -1.0
301,132 + 9427 mRNA_1059 0.38 0.5
301,542 + 0.3
301,545 - 0.8
301,559 - 0.5
301,566 + 0.1
301,566 + -2.1
301,566 + -1.9
301,574 + 1.9
301,582 + 1.1
301,582 + 0.3
301,582 + 1.8
301,582 + 0.3
301,585 + -0.7
301,587 + -0.8
301,589 - -0.0
301,737 - -0.1
301,821 - 0.1
302,015 + 0.1
302,097 - -0.9
302,146 - 0.5
302,152 + 0.2
302,221 - 0.2
302,479 + 9428 mRNA_1060 0.11 -0.1
302,506 - 9428 mRNA_1060 0.12 2.0
302,510 + 9428 mRNA_1060 0.12 0.1
302,554 + 9428 mRNA_1060 0.13 -0.2