Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_875

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_873: 9241 - K17497 PMM phosphomannomutase, at 2084129 to 2085860 9241 mRNA_874: 9242 - BLAST Pc13g07060 [Penicillium rubens Wisconsin 54-1255], at 2086190 to 2086635 9242 mRNA_875: 9243 - KOG2401 Predicted MutS-related protein involved in mismatch repair, at 2086661 to 2088947 9243 mRNA_876: 9244 - K00297 metF, MTHFR methylenetetrahydrofolate reductase (NADPH), at 2089626 to 2091862 9244

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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2,086,139 - 0.7
2,086,281 + 9242 mRNA_874 0.20 -1.6
2,086,390 - 9242 mRNA_874 0.45 1.5
2,086,699 - 0.8
2,086,708 + 0.2
2,086,711 - 0.8
2,086,717 + 0.3
2,086,727 + -0.4
2,086,729 + 2.8
2,086,735 - 0.4
2,086,744 - -0.3
2,087,004 - 9243 mRNA_875 0.15 0.5
2,087,014 + 9243 mRNA_875 0.15 0.3
2,087,027 + 9243 mRNA_875 0.16 1.9
2,087,028 - 9243 mRNA_875 0.16 -0.2
2,087,036 + 9243 mRNA_875 0.16 0.4
2,087,947 + 9243 mRNA_875 0.56 -0.2
2,088,480 - 9243 mRNA_875 0.80 0.2
2,088,649 + 9243 mRNA_875 0.87 -0.0
2,088,826 - -0.1
2,089,375 - 0.1
2,089,516 + -0.1
2,089,851 - 9244 mRNA_876 0.10 -0.8