Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_639

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_638: 9006 - K02947 RP-S10e, RPS10 small subunit ribosomal protein S10e, at 1533368 to 1534142 9006 mRNA_639: 9007 - K18027 PTPN3, PTPH1 tyrosine-protein phosphatase non-receptor type 3, at 1534937 to 1536294 9007 mRNA_640: 9008 - HMMPfam-UV radiation resistance protein and autophagy-related subunit 14-PF10186, at 1536476 to 1538269 9008

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,534,675 - 0.6
1,534,678 + 0.6
1,534,683 + 1.7
1,534,695 + 0.6
1,534,701 - 0.7
1,534,704 + -1.6
1,534,711 + -1.6
1,534,718 + -0.3
1,534,719 - 1.5
1,534,722 + -0.1
1,534,830 + 1.5
1,534,842 + 0.3
1,534,850 - 0.1
1,534,851 + -0.7
1,534,853 - 0.3
1,534,860 + 0.1
1,534,862 - -0.2
1,534,864 - -0.1
1,534,891 - 0.4
1,534,985 - -0.2
1,534,987 + 0.0
1,535,129 + 9007 mRNA_639 0.14 0.6
1,535,136 - 9007 mRNA_639 0.15 0.2
1,535,156 - 9007 mRNA_639 0.16 -0.2
1,535,281 - 9007 mRNA_639 0.25 0.5
1,535,291 - 9007 mRNA_639 0.26 -0.0
1,535,294 - 9007 mRNA_639 0.26 1.9
1,535,347 - 9007 mRNA_639 0.30 0.3
1,535,418 + 9007 mRNA_639 0.35 -1.6
1,535,598 + 9007 mRNA_639 0.49 -0.5
1,535,710 - 9007 mRNA_639 0.57 -0.5
1,535,717 - 9007 mRNA_639 0.57 0.2
1,535,724 + 9007 mRNA_639 0.58 0.8
1,535,750 - 9007 mRNA_639 0.60 1.2
1,535,833 - 9007 mRNA_639 0.66 -0.6
1,535,849 + 9007 mRNA_639 0.67 0.3
1,535,859 - 9007 mRNA_639 0.68 -0.2
1,535,870 + 9007 mRNA_639 0.69 0.6
1,536,177 - 0.1
1,536,441 - 0.3
1,536,748 - 9008 mRNA_640 0.15 -1.4
1,536,874 - 9008 mRNA_640 0.22 0.5
1,537,121 - 9008 mRNA_640 0.36 1.4