Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_480

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_479: 8847 - K17302 COPB2, SEC27 coatomer subunit beta', at 1114132 to 1117214 8847 mRNA_480: 8848 - ProSiteProfiles-Myb-type HTH DNA-binding domain profile.-PS51294,SUPERFAMILY--SSF46689, at 1117742 to 1121401 8848 mRNA_481: 8849 - K11756 RSC1_2 chromatin structure-remodeling complex subunit RSC1/2, at 1121651 to 1124733 8849

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,117,384 - -0.4
1,117,534 - 0.8
1,117,539 - 0.4
1,117,557 + 2.0
1,117,564 + 0.9
1,117,573 - 2.2
1,117,584 + -0.0
1,117,587 + 0.3
1,117,701 - -0.9
1,117,719 + 0.6
1,117,720 + -0.3
1,117,739 - -1.1
1,117,746 + 1.3
1,117,853 - 0.1
1,117,855 - 0.5
1,117,866 + -0.0
1,117,868 - 0.6
1,117,881 + -0.7
1,117,885 + -0.1
1,118,026 + -0.9
1,118,030 + -3.3
1,118,043 + -0.4
1,118,058 + 0.6
1,118,063 + 0.5
1,118,351 - 8848 mRNA_480 0.17 -1.3
1,118,481 + 8848 mRNA_480 0.20 0.9
1,118,807 + 8848 mRNA_480 0.29 -0.3
1,118,931 - 8848 mRNA_480 0.32 1.8
1,119,067 + 8848 mRNA_480 0.36 0.0
1,119,241 - 8848 mRNA_480 0.41 -0.4
1,120,193 + 8848 mRNA_480 0.67 -1.4
1,120,231 - 8848 mRNA_480 0.68 -0.6
1,120,267 + 8848 mRNA_480 0.69 0.1
1,120,401 - 8848 mRNA_480 0.73 1.2
1,120,407 + 8848 mRNA_480 0.73 0.5
1,121,408 + -0.4
1,121,425 + -0.8
1,122,009 + 8849 mRNA_481 0.12 -0.7