Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_289

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_288: 8656 - K00521 E1.16.1.7 ferric-chelate reductase, at 684049 to 686611 8656 mRNA_289: 8657 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 686748 to 688788 8657 mRNA_290: 8658 - HMMPfam-Major Facilitator Superfamily-PF07690,ProSitePatterns-Sugar transport proteins signature 1.-PS00216,ProSiteProfiles-Major facilitator superfamily (MFS) profile.-PS50850,SUPERFAMILY--SSF103473, at 689147 to 690940 8658

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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685,993 - 8656 mRNA_288 0.76 0.8
686,314 + 8656 mRNA_288 0.88 -1.2
686,419 + 1.3
686,439 - 1.5
686,574 - -0.2
686,581 - 0.5
686,587 + 1.1
686,606 + 0.5
686,607 - 0.7
686,740 - 0.5
686,742 + -0.0
686,743 - 0.3
686,751 - 2.1
686,884 + 0.1
686,893 - -1.5
687,066 - 8657 mRNA_289 0.16 -0.3
687,197 + 8657 mRNA_289 0.22 0.9
687,922 + 8657 mRNA_289 0.58 0.4
687,939 + 8657 mRNA_289 0.58 -0.4
687,942 + 8657 mRNA_289 0.59 0.4
688,080 - 8657 mRNA_289 0.65 -0.9
688,379 + 8657 mRNA_289 0.80 2.6
688,810 - 0.2
688,834 + 0.3
688,844 + 0.9
688,999 + 1.0
689,568 + 8658 mRNA_290 0.23 1.9