Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_202

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_201: 8569 - K00294 E1.2.1.88 1-pyrroline-5-carboxylate dehydrogenase, at 492772 to 495021 8569 mRNA_202: 8570 - HMMPfam-Frequency clock protein-PF09421, at 495941 to 499437 8570 mRNA_203: 8571 - SUPERFAMILY--SSF51197, at 499764 to 500298 8571 mRNA_204: 8572 - Hypothetical Protein, at 500316 to 500871 8572

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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495,030 + 0.3
495,125 - -1.0
495,147 - 0.9
495,152 + -0.1
495,155 + 0.6
495,155 - -0.3
495,157 - 2.9
495,159 - 0.1
495,162 + 0.3
495,162 + 0.3
495,168 - -1.3
495,169 - 0.1
495,177 - 0.2
495,179 + 0.0
495,180 - 1.2
495,181 + 1.9
495,181 + 0.1
495,182 + 0.1
495,182 + -0.8
495,183 + 2.5
495,186 - -0.6
495,189 + -1.8
495,192 + 1.8
495,201 - -0.1
495,209 + 0.5
495,247 + 0.1
495,495 - 1.0
495,505 - 1.2
496,356 - 8570 mRNA_202 0.12 -0.1
496,374 + 8570 mRNA_202 0.12 1.1
496,508 - 8570 mRNA_202 0.16 -1.4
496,546 - 8570 mRNA_202 0.17 0.3
496,698 + 8570 mRNA_202 0.22 0.8
497,018 - 8570 mRNA_202 0.31 -2.9
497,038 - 8570 mRNA_202 0.31 0.3
497,054 - 8570 mRNA_202 0.32 0.6
497,286 - 8570 mRNA_202 0.38 0.6
497,481 + 8570 mRNA_202 0.44 -0.0
497,656 + 8570 mRNA_202 0.49 -0.0
497,926 + 8570 mRNA_202 0.57 -0.1
498,047 - 8570 mRNA_202 0.60 -0.5
498,779 + 8570 mRNA_202 0.81 1.6
498,916 - 8570 mRNA_202 0.85 0.6
498,939 + 8570 mRNA_202 0.86 -0.8
499,071 - 8570 mRNA_202 0.90 0.3
499,072 + 8570 mRNA_202 0.90 -0.3
499,074 + 8570 mRNA_202 0.90 2.1
499,082 - 8570 mRNA_202 0.90 0.2
499,085 + 8570 mRNA_202 0.90 0.2
499,186 + -0.6
499,198 + -0.7
499,215 - -1.3
499,221 - 0.4
499,224 - -0.2
499,236 + 0.2
499,238 - 0.8
499,240 + 0.8
499,360 - -0.1
499,369 - 0.3
499,379 + 0.6
499,380 + 0.6
499,382 - 1.5
499,385 + -0.4
499,386 + 0.2
499,500 - -0.4
499,503 + 0.9
499,506 - -0.8
499,516 - -0.2
499,517 - 0.9
499,520 + -0.4
499,523 - 0.2
499,526 + -0.9
499,536 + -0.4
499,538 + 1.4
499,666 - 0.2
499,669 - 0.3
499,813 - -1.1
499,857 + 8571 mRNA_203 0.17 0.2
499,958 + 8571 mRNA_203 0.36 -0.4
500,100 + 8571 mRNA_203 0.63 -0.2
500,110 + 8571 mRNA_203 0.65 2.1
500,274 - 0.4
500,401 - 8572 mRNA_204 0.15 0.8
500,425 - 8572 mRNA_204 0.20 0.3