Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8448

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8448: 16816 - HMMPfam-Protein of unknown function (DUF962)-PF06127, at 1257751 to 1258571 16816 mRNA_8449: 16817 - KOG0198 MEKK and related serine/threonine protein kinases, at 1258732 to 1261080 16817

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,256,793 + 0.0
1,256,795 + 0.5
1,256,799 - 1.1
1,256,800 + -0.3
1,256,800 - -0.3
1,256,815 + -0.5
1,256,820 + 2.7
1,256,822 + 0.8
1,256,961 - 0.8
1,256,961 - 1.0
1,256,986 + 1.8
1,257,103 + -0.8
1,257,108 + 0.9
1,257,144 + -0.3
1,257,152 - 0.3
1,257,299 - -0.2
1,257,394 - 0.7
1,257,401 - 0.9
1,257,404 - 0.4
1,257,407 - -0.2
1,257,415 + 0.2
1,257,427 + 1.1
1,257,455 - -0.6
1,257,478 - 0.5
1,257,498 - -0.2
1,257,508 + -0.3
1,257,508 - 1.6
1,257,516 - 0.7
1,257,534 - 1.0
1,257,535 + 0.9
1,257,540 + -0.4
1,257,546 + 0.5
1,257,563 - 0.3
1,257,578 - 0.8
1,257,630 + -0.2
1,257,649 + 0.6
1,257,702 - 0.2
1,257,702 - -0.2
1,257,702 - 0.1
1,257,702 - 0.5
1,257,704 + -1.3
1,257,704 + 0.1
1,257,705 - -0.1
1,257,707 - -0.5
1,257,721 + 0.1
1,257,727 - -0.1
1,257,732 + 0.2
1,257,740 - -0.4
1,257,742 + 0.1
1,257,774 + 1.5
1,257,802 - 3.2
1,257,829 - -0.0
1,257,854 + 16816 mRNA_8448 0.13 0.7
1,257,854 + 16816 mRNA_8448 0.13 -0.0
1,257,883 + 16816 mRNA_8448 0.16 -0.5
1,257,915 + 16816 mRNA_8448 0.20 0.3
1,257,922 + 16816 mRNA_8448 0.21 0.8
1,257,940 + 16816 mRNA_8448 0.23 0.1
1,258,009 - 16816 mRNA_8448 0.31 0.8
1,258,020 - 16816 mRNA_8448 0.33 2.0
1,258,033 + 16816 mRNA_8448 0.34 0.6
1,258,135 + 16816 mRNA_8448 0.47 -0.3
1,258,167 + 16816 mRNA_8448 0.51 -0.4
1,258,290 - 16816 mRNA_8448 0.66 1.0
1,258,301 - 16816 mRNA_8448 0.67 -0.1
1,258,315 + 16816 mRNA_8448 0.69 -0.8
1,258,318 + 16816 mRNA_8448 0.69 0.7
1,258,328 + 16816 mRNA_8448 0.70 1.0
1,258,454 + 16816 mRNA_8448 0.86 0.6
1,258,456 - 16816 mRNA_8448 0.86 0.9
1,258,725 - 0.4
1,258,887 - 0.3
1,258,918 + -0.0
1,259,072 + 16817 mRNA_8449 0.14 1.0
1,259,111 - 16817 mRNA_8449 0.16 1.8
1,259,359 + 16817 mRNA_8449 0.27 -0.8
1,259,360 - 16817 mRNA_8449 0.27 0.3
1,259,374 - 16817 mRNA_8449 0.27 -0.0
1,259,434 + 16817 mRNA_8449 0.30 0.7
1,259,551 - 16817 mRNA_8449 0.35 -0.2