Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_8372

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_8371: 16739 - HMMPfam-GPR1/FUN34/yaaH family-PF01184, at 1055987 to 1057436 16739 mRNA_8372: 16740 - KOG1729 FYVE finger containing protein, at 1057653 to 1060208 16740 mRNA_8373: 16741 - KOG0504 FOG Ankyrin repeat, at 1060392 to 1061446 16741

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,056,813 - 16739 mRNA_8371 0.57 -1.1
1,057,522 - 0.3
1,057,544 + -0.2
1,057,545 - -0.4
1,057,586 - -0.1
1,057,586 - -2.0
1,057,665 - -1.1
1,057,671 + -1.2
1,057,718 + -1.1
1,057,729 - -1.4
1,057,738 - -0.9
1,057,742 + 0.1
1,057,953 + 16740 mRNA_8372 0.12 -0.2
1,058,219 + 16740 mRNA_8372 0.22 0.3
1,058,360 + 16740 mRNA_8372 0.28 0.4
1,058,453 + 16740 mRNA_8372 0.31 0.2
1,058,897 - 16740 mRNA_8372 0.49 1.1
1,059,330 + 16740 mRNA_8372 0.66 -1.5
1,059,533 + 16740 mRNA_8372 0.74 -0.0
1,059,605 + 16740 mRNA_8372 0.76 -0.4
1,059,698 + 16740 mRNA_8372 0.80 0.0
1,059,763 + 16740 mRNA_8372 0.83 0.5
1,059,917 + 16740 mRNA_8372 0.89 2.0
1,060,044 - 0.3
1,060,257 - -0.6
1,060,371 + -0.3
1,060,631 - 16741 mRNA_8373 0.23 0.6
1,060,667 + 16741 mRNA_8373 0.26 -0.3
1,060,693 + 16741 mRNA_8373 0.29 0.7
1,061,134 - 16741 mRNA_8373 0.70 0.2