Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7842

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7841: 16209 - K04728 ATM, TEL1 ataxia telangiectasia mutated family protein, at 1184970 to 1194668 16209 mRNA_7842: 16210 - HMMPfam-Ankyrin repeats (3 copies)-PF12796,ProSiteProfiles-Ankyrin repeat profile.-PS50088,ProSiteProfiles-Ankyrin repeat region circular profile.-PS50297,SMART-ankyrin repeats-SM00248,SUPERFAMILY--SSF48403, at 1195063 to 1195629 16210 mRNA_7843: 16211 - BLAST alpha- -glucan [Moniliophthora roreri MCA 2997], at 1195888 to 1196592 16211

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,194,092 + 0.4
1,194,141 + 0.4
1,194,265 - 0.6
1,194,310 + -0.8
1,194,313 - -2.0
1,194,464 + -0.4
1,194,572 + 1.2
1,194,838 + -2.4
1,194,953 + 1.7
1,195,300 + 16210 mRNA_7842 0.42 0.9
1,195,419 + 16210 mRNA_7842 0.63 0.0
1,195,432 - 16210 mRNA_7842 0.65 1.2
1,195,436 + 16210 mRNA_7842 0.66 1.2
1,195,583 + -0.6
1,195,617 + -1.2
1,195,731 - 0.5
1,195,739 + -1.7
1,195,747 + 1.4
1,195,863 - -0.6
1,195,871 - 0.3
1,195,873 - 0.5