Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7544

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7543: 15911 - KOG1208 Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases), at 528025 to 529460 15911 mRNA_7544: 15912 - K07552 bcr MFS transporter, DHA1 family, bicyclomycin/chloramphenicol resistance protein, at 529753 to 531940 15912 mRNA_7545: 15913 - Hypothetical Protein, at 532000 to 532304 15913 mRNA_7546: 15914 - K04523 UBQLN, DSK2 ubiquilin, at 532517 to 534299 15914

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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529,006 - 15911 mRNA_7543 0.68 0.6
529,283 + 15911 mRNA_7543 0.88 -0.1
529,310 - 15911 mRNA_7543 0.89 0.1
529,405 + -0.4
529,446 + 0.1
529,554 + -0.3
529,570 + 0.9
529,582 - 1.1
529,592 - 0.4
529,593 - 0.1
529,650 - 0.5
529,653 - -0.8
529,653 - -0.6
529,656 + 1.5
529,663 - -0.2
529,666 + 0.7
529,668 + 0.2
529,673 + 0.3
529,679 - 1.6
529,686 - 0.3
529,690 - -0.1
529,694 - -0.4
529,695 - -1.7
529,698 + -0.8
529,705 - 0.1
529,705 + 0.7
529,720 - 0.4
529,852 + 0.0
530,143 + 15912 mRNA_7544 0.18 1.0
530,144 + 15912 mRNA_7544 0.18 2.2
530,281 - 15912 mRNA_7544 0.24 0.9
530,422 + 15912 mRNA_7544 0.31 0.9
530,883 + 15912 mRNA_7544 0.52 0.2
530,987 + 15912 mRNA_7544 0.56 -0.7
530,988 - 15912 mRNA_7544 0.56 0.1
531,259 - 15912 mRNA_7544 0.69 -0.2
531,760 - 2.1
532,374 + 1.3
532,401 + -0.5
532,641 - -1.0
532,822 - 15914 mRNA_7546 0.17 2.5