Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7203

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7202: 15570 - BLAST expressed protein [Schizophyllum commune H4-8], at 1114598 to 1116193 15570 mRNA_7203: 15571 - SUPERFAMILY--SSF52047, at 1116612 to 1117999 15571 mRNA_7204: 15572 - HMMPfam-F-box-like-PF12937,ProSiteProfiles-F-box domain profile.-PS50181,SUPERFAMILY--SSF52047,SUPERFAMILY--SSF81383, at 1118397 to 1120170 15572

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,115,681 - 15570 mRNA_7202 0.68 -0.4
1,115,880 - 15570 mRNA_7202 0.80 1.1
1,115,932 + 15570 mRNA_7202 0.84 3.5
1,115,932 - 15570 mRNA_7202 0.84 2.5
1,115,953 - 15570 mRNA_7202 0.85 -0.3
1,115,957 - 15570 mRNA_7202 0.85 -0.7
1,115,970 + 15570 mRNA_7202 0.86 -0.3
1,115,974 + 15570 mRNA_7202 0.86 -0.3
1,115,989 - 15570 mRNA_7202 0.87 0.6
1,116,012 - 15570 mRNA_7202 0.89 -1.4
1,116,017 + 15570 mRNA_7202 0.89 0.6
1,116,021 - 15570 mRNA_7202 0.89 2.7
1,116,257 + 0.3
1,116,260 - -0.9
1,116,261 + -0.6
1,116,265 + 0.1
1,116,282 + -0.1
1,116,398 + 0.3
1,116,398 - 0.2
1,116,420 + 1.1
1,116,443 + 0.3
1,116,545 - -0.2
1,116,547 - 0.7
1,116,567 - 0.3
1,116,570 + -0.0
1,116,576 - -0.3
1,116,706 - -0.4
1,116,723 - -1.3
1,116,730 + -0.1
1,116,730 + 0.9
1,116,911 + 15571 mRNA_7203 0.22 1.7
1,117,006 - 15571 mRNA_7203 0.28 -0.5
1,117,070 + 15571 mRNA_7203 0.33 -0.0
1,117,169 + 15571 mRNA_7203 0.40 -1.0
1,117,588 + 15571 mRNA_7203 0.70 -0.2
1,117,625 + 15571 mRNA_7203 0.73 -1.3
1,117,745 - 15571 mRNA_7203 0.82 -1.3
1,117,933 + 0.5
1,118,154 - 0.7
1,118,455 + 0.8
1,118,514 - -0.5
1,118,634 + 15572 mRNA_7204 0.13 -0.7