Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7129

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7128: 15496 - K00939 adk, AK adenylate kinase, at 944172 to 945488 15496 mRNA_7129: 15497 - K10627 RAD18 E3 ubiquitin-protein ligase RAD18, at 945655 to 947671 15497 mRNA_7130: 15498 - KOG3077 Uncharacterized conserved protein, at 948006 to 949396 15498

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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945,527 + 0.1
945,533 - 0.5
945,555 - 0.7
945,564 + -0.1
945,567 + -0.4
945,570 + 0.2
945,661 - 0.9
946,137 + 15497 mRNA_7129 0.24 0.9
946,570 + 15497 mRNA_7129 0.45 0.2
946,689 + 15497 mRNA_7129 0.51 -0.0
946,844 - 15497 mRNA_7129 0.59 0.6
946,972 + 15497 mRNA_7129 0.65 0.1
947,120 - 15497 mRNA_7129 0.73 0.2
947,265 - 15497 mRNA_7129 0.80 0.3
947,421 - 15497 mRNA_7129 0.88 0.3
947,429 + 15497 mRNA_7129 0.88 -0.1
947,440 + 15497 mRNA_7129 0.88 0.6
947,537 - -0.5
947,576 - 0.0
947,595 - -1.6
947,722 - 0.6
947,871 - 1.1
947,879 - 1.4
947,882 + -1.2
947,977 - 1.3
948,002 - -0.8
948,009 - -0.4
948,009 - -0.1
948,014 - 0.7
948,017 - 0.2
948,018 - 0.4
948,024 + 1.2
948,163 + 15498 mRNA_7130 0.11 2.1
948,167 + 15498 mRNA_7130 0.12 -0.8
948,468 - 15498 mRNA_7130 0.33 0.0