Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7020

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_7019: 15387 - K13212 LUC7L2 RNA-binding protein Luc7-like 2, at 686088 to 688034 15387 mRNA_7020: 15388 - K11446 KDM5, JARID1 histone demethylase JARID1, at 688229 to 691595 15388

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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687,471 - 15387 mRNA_7019 0.71 0.4
687,486 - 15387 mRNA_7019 0.72 0.9
688,080 + -1.3
688,203 - 0.5
688,220 + -2.3
688,493 - -1.2
688,667 + 15388 mRNA_7020 0.13 -0.2
688,806 - 15388 mRNA_7020 0.17 -0.0
689,199 + 15388 mRNA_7020 0.29 0.8
689,848 + 15388 mRNA_7020 0.48 -0.7
689,959 - 15388 mRNA_7020 0.51 0.9
690,013 + 15388 mRNA_7020 0.53 -0.4
690,159 + 15388 mRNA_7020 0.57 -1.2
690,861 - 15388 mRNA_7020 0.78 0.7
691,170 + 15388 mRNA_7020 0.87 1.1
691,170 - 15388 mRNA_7020 0.87 0.6
691,299 - -0.1
691,451 - -0.7
691,456 + -0.3
691,478 + 0.1
691,479 + 0.4
691,495 + 0.8
691,602 + -0.2
691,630 + -1.5
691,630 + -0.9
691,633 - -0.3
691,633 - -0.2
691,763 - -0.1
691,767 - -1.6
691,780 - 0.5
691,780 + -3.1
691,792 + 0.1
691,794 + 0.5
691,796 - -0.2
691,796 - -1.6
691,939 + -0.6
691,940 - -0.7
692,072 - 2.2
692,081 + 1.0
692,084 - -1.3
692,232 - 3.1
692,248 + 0.2
692,393 - 0.7
692,395 + 0.4
692,395 + 0.4
692,527 + -0.4
692,528 + 2.0
692,553 - -0.8