Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_7000

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6999: 15367 - HMMPfam-CUE domain-PF02845,ProSiteProfiles-CUE domain profile.-PS51140,SMART-Domain that may be involved in binding ubiquitin-conjugating enzymes (UBCs)-SM00546,SUPERFAMILY--SSF46934, at 636264 to 637761 15367 mRNA_7000: 15368 - K06653 PHO81 CDK inhibitor PHO81, at 638366 to 642076 15368 mRNA_7001: 15369 - KOG0566 Inositol-1,4,5-triphosphate 5-phosphatase (synaptojanin), INP51/INP52/INP53 family, at 642201 to 644311 15369

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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637,376 + 15367 mRNA_6999 0.74 1.8
637,491 - 15367 mRNA_6999 0.82 -0.1
637,508 - 15367 mRNA_6999 0.83 0.1
637,657 - 0.3
637,678 - 0.2
637,780 - 1.0
637,847 + -0.5
637,981 + -0.0
637,987 - -0.2
637,988 + 1.3
637,996 - -0.4
637,999 + 0.6
638,000 + -1.5
638,279 + 0.4
638,287 + 1.1
638,426 + 0.3
638,564 + 1.0
638,584 - 1.1
638,590 + 1.1
638,996 - 15368 mRNA_7000 0.17 0.5
638,999 - 15368 mRNA_7000 0.17 0.3
639,020 - 15368 mRNA_7000 0.18 0.3
639,276 + 15368 mRNA_7000 0.25 -0.0
639,451 - 15368 mRNA_7000 0.29 1.0
639,562 - 15368 mRNA_7000 0.32 0.5
639,736 + 15368 mRNA_7000 0.37 0.7
639,771 + 15368 mRNA_7000 0.38 0.9
640,032 + 15368 mRNA_7000 0.45 0.3
640,259 - 15368 mRNA_7000 0.51 0.1
640,575 + 15368 mRNA_7000 0.60 0.7
640,964 - 15368 mRNA_7000 0.70 1.3
641,072 + 15368 mRNA_7000 0.73 -0.5
641,326 + 15368 mRNA_7000 0.80 0.6
641,781 + -0.2
642,010 - 0.2
642,081 + 0.5
642,641 - 15369 mRNA_7001 0.21 -0.4
643,024 - 15369 mRNA_7001 0.39 0.5