Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6985

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6984: 15352 - HMMPfam-Fungal specific transcription factor domain-PF04082, at 599695 to 602665 15352 mRNA_6985: 15353 - BLAST chitin deacetylase [Moniliophthora roreri MCA 2997], at 602865 to 604394 15353 mRNA_6986: 15354 - K12872 RBM22, SLT11 pre-mRNA-splicing factor RBM22/SLT11, at 604534 to 605830 15354

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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601,963 + 15352 mRNA_6984 0.76 -1.0
601,968 - 15352 mRNA_6984 0.77 0.9
602,072 - 15352 mRNA_6984 0.80 -0.4
602,394 - -0.2
602,499 - -0.4
602,531 - -1.6
602,673 - -0.2
602,674 - 3.9
602,680 + -0.8
602,694 - -0.2
602,694 - 0.3
602,715 - -1.4
602,715 - -0.1
602,716 + 0.5
602,717 - -0.9
602,733 + 0.7
602,750 - -0.3
602,801 - -0.4
602,828 - -0.9
602,857 + -2.1
603,083 + 15353 mRNA_6985 0.14 0.5
603,264 - 15353 mRNA_6985 0.26 1.7
603,271 - 15353 mRNA_6985 0.27 -0.3
603,374 + 15353 mRNA_6985 0.33 -2.0
603,421 + 15353 mRNA_6985 0.36 0.7
603,424 + 15353 mRNA_6985 0.37 1.5
603,588 - 15353 mRNA_6985 0.47 0.1
603,591 - 15353 mRNA_6985 0.47 -0.7
603,668 - 15353 mRNA_6985 0.52 -0.7
603,677 - 15353 mRNA_6985 0.53 1.3
603,699 - 15353 mRNA_6985 0.55 0.3
603,974 - 15353 mRNA_6985 0.72 0.1
603,992 - 15353 mRNA_6985 0.74 1.2
604,129 - 15353 mRNA_6985 0.83 0.8
604,295 - 0.3
604,300 - 0.7
604,300 - 0.2
604,449 - 0.2
604,454 - 0.5
604,455 + 1.4
604,484 + 0.1
604,589 - -1.7