Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6270

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6269: 14637 - KOG1336 Monodehydroascorbate/ferredoxin reductase, at 405556 to 407019 14637 mRNA_6270: 14638 - KOG2645 Type I phosphodiesterase/nucleotide pyrophosphatase, at 407745 to 410533 14638 mRNA_6271: 14639 - Hypothetical Protein, at 410534 to 411923 14639

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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406,775 + 14637 mRNA_6269 0.83 0.1
407,079 - 0.3
407,092 - -0.0
407,096 + -0.1
407,201 - -0.4
407,216 - -0.5
407,230 + 0.5
407,234 - -1.0
407,491 - -0.5
407,503 - -0.0
407,524 - 0.1
407,527 - 1.3
407,535 - -1.3
407,544 - 2.1
407,548 - -0.7
407,552 + 0.2
407,670 - -0.9
407,673 - 0.4
407,680 + 0.2
407,847 - 1.0
407,985 - -0.2
407,994 + -0.2
408,006 + 1.0
408,266 - 14638 mRNA_6270 0.19 -2.4
408,321 + 14638 mRNA_6270 0.21 -1.4
408,416 + 14638 mRNA_6270 0.24 -0.6
408,716 + 14638 mRNA_6270 0.35 1.5
408,721 - 14638 mRNA_6270 0.35 0.1
409,016 + 14638 mRNA_6270 0.46 -1.0
409,124 - 14638 mRNA_6270 0.49 -0.2
409,139 - 14638 mRNA_6270 0.50 0.5
409,271 - 14638 mRNA_6270 0.55 0.7
409,434 - 14638 mRNA_6270 0.61 -1.0
409,955 - 14638 mRNA_6270 0.79 -0.8
410,165 - 14638 mRNA_6270 0.87 1.4
410,174 + 14638 mRNA_6270 0.87 -1.7
410,301 - 0.0
410,447 - 1.1
410,471 + 0.2
410,476 - 0.8
410,572 + -0.8
410,592 - 1.0
410,599 + -0.2
410,601 + 0.4
410,606 + 0.1
410,607 + -0.3
410,617 - -1.6
410,765 - 14639 mRNA_6271 0.17 -0.3
410,770 - 14639 mRNA_6271 0.17 -0.6
410,781 + 14639 mRNA_6271 0.18 1.2
410,781 - 14639 mRNA_6271 0.18 0.1
410,789 + 14639 mRNA_6271 0.18 0.4
410,792 + 14639 mRNA_6271 0.19 0.4
410,792 - 14639 mRNA_6271 0.19 -0.1
410,797 - 14639 mRNA_6271 0.19 0.2
410,816 + 14639 mRNA_6271 0.20 1.0
410,925 - 14639 mRNA_6271 0.28 -0.4
410,928 + 14639 mRNA_6271 0.28 0.9
411,080 + 14639 mRNA_6271 0.39 0.4
411,095 - 14639 mRNA_6271 0.40 0.2
411,106 + 14639 mRNA_6271 0.41 1.0
411,190 + 14639 mRNA_6271 0.47 1.9
411,233 - 14639 mRNA_6271 0.50 -0.3
411,253 - 14639 mRNA_6271 0.52 0.4
411,254 + 14639 mRNA_6271 0.52 0.3
411,398 - 14639 mRNA_6271 0.62 -1.3
411,522 - 14639 mRNA_6271 0.71 -3.9
411,527 - 14639 mRNA_6271 0.71 -0.3