Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6182

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6181: 14549 - K13126 PABPC polyadenylate-binding protein, at 192986 to 195356 14549 mRNA_6182: 14550 - K06665 SSN6 glucose repression mediator protein, at 196153 to 199901 14550 mRNA_6183: 14551 - Hypothetical Protein, at 200560 to 201520 14551

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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195,417 + -0.5
195,565 - -1.7
195,600 - -0.2
195,624 + -0.5
195,736 - 0.5
195,738 + 0.7
195,742 + -0.5
195,744 + 0.9
195,746 + 0.4
195,756 + 0.3
195,757 - 0.1
195,757 + -0.3
195,768 - -0.5
195,773 + 0.8
195,780 + -0.1
195,908 - 0.8
196,044 - 0.2
196,055 - -1.1
196,056 + 1.1
196,113 + 1.1
196,151 + 0.0
196,498 + -0.1
196,613 + 14550 mRNA_6182 0.12 -1.6
196,805 - 14550 mRNA_6182 0.17 -0.9
196,985 + 14550 mRNA_6182 0.22 0.9
197,099 + 14550 mRNA_6182 0.25 0.8
197,495 - 14550 mRNA_6182 0.36 -0.8
197,639 - 14550 mRNA_6182 0.40 -0.8
197,827 - 14550 mRNA_6182 0.45 -0.7
198,001 + 14550 mRNA_6182 0.49 0.5
198,138 + 14550 mRNA_6182 0.53 0.5
198,293 - 14550 mRNA_6182 0.57 0.1
198,400 - 14550 mRNA_6182 0.60 -0.9
198,426 + 14550 mRNA_6182 0.61 0.8
198,658 - 14550 mRNA_6182 0.67 -0.9
198,799 - 14550 mRNA_6182 0.71 -1.0
199,673 + -0.8
199,684 + -0.6
199,806 - -1.3
199,819 - -1.4
199,820 - -0.8
199,856 + -1.0
199,937 - -0.8
199,956 + 0.8
199,971 + -0.6
199,987 + -1.5
199,998 + -0.3
200,004 + -0.4
200,104 - -0.4
200,110 - -0.4
200,115 - 0.3
200,119 - -1.0
200,121 - -1.3
200,121 - -0.0
200,122 + 1.0
200,131 - -0.4
200,139 + 0.2
200,140 - -0.3
200,141 + 1.8
200,147 - -1.4
200,151 + 1.3
200,164 + -0.2
200,171 - 0.3
200,245 + 0.3
200,249 - 0.1
200,259 - 0.3
200,266 - -0.3
200,267 + 0.4
200,269 - 0.4
200,272 - 0.1
200,274 - -0.8
200,274 + -0.3
200,276 - 0.0
200,276 - 0.2
200,279 + -0.7
200,281 + -0.5
200,290 + -2.5
200,292 - 0.6
200,292 + -0.1
200,294 - -0.5
200,294 + -0.7
200,294 + 1.9
200,296 + 0.9
200,298 + 0.5
200,301 + 1.1
200,304 + 1.0
200,307 + -1.2
200,310 + 0.4
200,315 + 0.1
200,318 + -1.1
200,340 + -0.7
200,342 + -0.5
200,377 + 0.4
200,389 - 0.4
200,390 + 0.2
200,393 - 2.0
200,403 - -0.1
200,406 + -0.6
200,415 + -0.3
200,498 - -0.9
200,549 + 0.8
200,555 + -1.3
200,558 - 0.7
200,560 - 0.5
200,563 - 0.4
200,570 - 0.4
200,574 - -0.0
200,574 - 0.3
200,589 + 0.8
200,590 - -0.2
200,598 + -0.2
200,599 - 1.7
200,601 + -0.5
200,602 - -0.6
200,602 + 0.5
200,603 - -0.6
200,603 - -1.7
200,604 - 1.0
200,609 - 0.4
200,616 - 0.1
200,619 + -1.8
200,622 + -0.1
200,626 - 1.1
200,629 + -2.6
200,632 + 0.5
200,633 + 1.4
200,634 - -0.6
200,638 + -2.5
200,639 + 2.0
200,641 - 0.8
200,643 + -0.1
200,643 + -0.1
200,644 + 0.7
200,652 + -0.2
200,737 + 14551 mRNA_6183 0.18 -0.4
200,755 - 14551 mRNA_6183 0.20 0.4
200,757 + 14551 mRNA_6183 0.20 -0.1
200,760 - 14551 mRNA_6183 0.21 1.2
200,761 + 14551 mRNA_6183 0.21 1.2
200,761 + 14551 mRNA_6183 0.21 0.0
200,772 + 14551 mRNA_6183 0.22 -0.3
200,781 + 14551 mRNA_6183 0.23 0.2
200,781 - 14551 mRNA_6183 0.23 0.2
200,786 - 14551 mRNA_6183 0.24 0.7
200,788 + 14551 mRNA_6183 0.24 0.0
200,798 - 14551 mRNA_6183 0.25 -0.5
200,799 - 14551 mRNA_6183 0.25 -1.7
200,799 + 14551 mRNA_6183 0.25 0.4
200,800 + 14551 mRNA_6183 0.25 0.7
200,804 - 14551 mRNA_6183 0.25 -0.2
200,832 + 14551 mRNA_6183 0.28 0.7