Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6132

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6131: 14499 - K01057 PGLS, pgl, devB 6-phosphogluconolactonase, at 79041 to 80063 14499 mRNA_6132: 14500 - K20630 CHN1_2, ARHGAP2_3 chimaerin, at 80380 to 84392 14500 mRNA_6133: 14501 - HMMPfam-bZIP transcription factor-PF00170,ProSitePatterns-Basic-leucine zipper (bZIP) domain signature.-PS00036,ProSiteProfiles-Basic-leucine zipper (bZIP) domain profile.-PS50217,SMART-basic region leucin zipper-SM00338,SUPERFAMILY--SSF57959, at 85316 to 87118 14501

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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80,394 + -0.5
80,704 - -0.9
81,721 - 14500 mRNA_6132 0.33 -0.7
81,745 - 14500 mRNA_6132 0.34 0.8
81,903 - 14500 mRNA_6132 0.38 0.0
81,942 + 14500 mRNA_6132 0.39 -0.6
82,069 + 14500 mRNA_6132 0.42 2.0
82,481 + 14500 mRNA_6132 0.52 -0.7
82,506 - 14500 mRNA_6132 0.53 -3.2
82,783 - 14500 mRNA_6132 0.60 0.2
83,013 - 14500 mRNA_6132 0.66 -1.1
83,022 + 14500 mRNA_6132 0.66 -1.1
83,195 - 14500 mRNA_6132 0.70 -0.9
84,043 - -0.5
84,314 + -0.8
84,582 + -0.5
84,720 - -0.6
84,721 - 0.2
84,869 - 0.5
84,871 - -2.7
84,890 - 1.5
84,935 + -1.7
85,033 - -0.5
85,039 - 1.0
85,045 - -0.7
85,056 - -0.1
85,064 - 1.3
85,075 - -0.6
85,095 - -0.8
85,099 - 0.6
85,106 - 1.3
85,113 - 0.9
85,115 + 0.3
85,144 + 1.0
85,282 - -0.1