Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_6106

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_6106: 14474 - K08332 VAC8 vacuolar protein 8, at 223 to 3658 14474 mRNA_6107: 14475 - K14401 CPSF1, CFT1 cleavage and polyadenylation specificity factor subunit 1, at 3990 to 10005 14475

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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39 + -0.7
39 + -0.7
40 + -0.3
40 + 0.6
40 + 0.7
41 + -1.2
56 + 0.3
56 + 0.1
56 + -0.6
58 + -0.1
59 + -0.5
59 + -1.7
62 - 1.3
65 - -0.4
77 + 0.3
84 + -1.8
102 + 0.3
137 + -0.4
151 + 0.0
200 + -0.3
208 + 0.2
216 + -0.3
229 + -1.5
348 - 0.2
430 + 0.9
498 - -0.3
502 - 0.3
685 + 14474 mRNA_6106 0.13 0.0
747 + 14474 mRNA_6106 0.15 -0.7
755 + 14474 mRNA_6106 0.15 -1.6
946 + 14474 mRNA_6106 0.21 0.1
975 + 14474 mRNA_6106 0.22 -0.6
1,245 + 14474 mRNA_6106 0.30 1.2
2,125 + 14474 mRNA_6106 0.55 0.6
2,839 - 14474 mRNA_6106 0.76 1.3
3,125 - 14474 mRNA_6106 0.84 1.3
3,248 - 14474 mRNA_6106 0.88 -0.2
3,570 + 2.6
3,665 + -1.4
3,692 + -0.9
3,706 + 0.7
3,726 + 0.5
3,820 + 0.5
3,853 + 0.4
3,859 + 0.8
3,909 - 0.4
3,929 - 1.7