Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5478

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5477: 13845 - K20179 VPS11, PEP5 vacuolar protein sorting-associated protein 11, at 188584 to 192714 13845 mRNA_5478: 13846 - SUPERFAMILY--SSF81383, at 192866 to 194409 13846 mRNA_5479: 13847 - KOG3070 Predicted RNA-binding protein containing PIN domain and invovled in translation or RNA processing, at 194806 to 195878 13847

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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192,339 + 1.5
192,752 - -0.5
192,792 - 0.6
192,795 - 0.2
192,796 + 0.8
192,800 + -0.6
192,816 - -1.0
192,822 + 0.2
192,823 + 1.3
192,957 - -0.5
192,962 + -1.6
193,945 - 13846 mRNA_5478 0.70 0.6
194,019 + 13846 mRNA_5478 0.75 0.5
194,111 + 13846 mRNA_5478 0.81 -0.0
194,225 + 13846 mRNA_5478 0.88 -0.8
194,534 - -0.5
194,717 - -2.2
194,883 - 0.6
194,977 + 13847 mRNA_5479 0.16 0.1