Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5448

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5447: 13815 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 113720 to 116134 13815 mRNA_5448: 13816 - BLAST GQ67_01206T0 [Komagataella phaffii], at 116614 to 117202 13816 mRNA_5449: 13817 - HMMPfam-MYND finger-PF01753,ProSitePatterns-Zinc finger MYND-type signature.-PS01360,ProSiteProfiles-Zinc finger MYND-type profile.-PS50865,SUPERFAMILY--SSF144232, at 117409 to 118509 13817

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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115,862 + 13815 mRNA_5447 0.89 0.6
115,997 - 0.7
116,016 + 0.3
116,034 - -0.1
116,041 + 1.9
116,056 - 0.4
116,083 + -0.6
116,203 - 1.6
116,208 - 0.4
116,619 + -0.8
116,633 + -0.4
116,659 - 1.5
116,803 - 13816 mRNA_5448 0.32 -0.5
116,803 + 13816 mRNA_5448 0.32 0.4
116,803 - 13816 mRNA_5448 0.32 0.0
116,894 + 13816 mRNA_5448 0.48 1.8
116,926 + 13816 mRNA_5448 0.53 0.1
117,073 + 13816 mRNA_5448 0.78 0.1
117,505 - -1.4
117,818 + 13817 mRNA_5449 0.37 0.6
117,966 + 13817 mRNA_5449 0.51 -0.7
117,972 + 13817 mRNA_5449 0.51 0.4
118,025 - 13817 mRNA_5449 0.56 -0.3
118,074 - 13817 mRNA_5449 0.60 0.7
118,099 + 13817 mRNA_5449 0.63 -1.0