Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5423

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5422: 13790 - HMMPfam-Domain of unknown function (DUF336)-PF03928,SUPERFAMILY--SSF143744, at 64822 to 65544 13790 mRNA_5423: 13791 - K01426 E3.5.1.4, amiE amidase, at 65728 to 67986 13791 mRNA_5424: 13792 - KOG0255 Synaptic vesicle transporter SVOP and related transporters (major facilitator superfamily), at 68468 to 70424 13792

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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64,730 + 0.2
64,772 + 0.3
64,799 + -0.2
64,822 - -0.8
64,895 - 13790 mRNA_5422 0.10 1.4
64,929 - 13790 mRNA_5422 0.15 -0.2
64,930 + 13790 mRNA_5422 0.15 -1.1
64,961 - 13790 mRNA_5422 0.19 -1.7
64,961 - 13790 mRNA_5422 0.19 1.8
65,030 + 13790 mRNA_5422 0.29 -1.5
65,070 - 13790 mRNA_5422 0.34 -0.4
65,076 + 13790 mRNA_5422 0.35 0.8
65,089 - 13790 mRNA_5422 0.37 0.7
65,102 + 13790 mRNA_5422 0.39 0.9
65,200 - 13790 mRNA_5422 0.52 -0.8
65,252 + 13790 mRNA_5422 0.59 2.7
65,373 - 13790 mRNA_5422 0.76 1.0
65,474 - 1.3
65,494 - 0.7
65,498 - -2.1
65,501 + 0.7
65,657 + -0.2
65,706 - 1.6
65,766 - 1.1
65,774 - 1.2
65,774 - 1.3
65,785 - 0.7
65,808 - -0.2
65,821 - -0.3
65,821 + 0.5
65,825 - 1.3
65,930 + 0.4
65,940 + 1.5
65,976 - 13791 mRNA_5423 0.11 1.9
66,071 + 13791 mRNA_5423 0.15 -1.2
66,082 + 13791 mRNA_5423 0.16 0.0
66,102 - 13791 mRNA_5423 0.17 -0.1
66,107 + 13791 mRNA_5423 0.17 -1.0
66,130 - 13791 mRNA_5423 0.18 1.3
66,131 + 13791 mRNA_5423 0.18 -0.4
66,174 - 13791 mRNA_5423 0.20 0.5
66,183 + 13791 mRNA_5423 0.20 1.6
66,186 - 13791 mRNA_5423 0.20 0.7
66,256 - 13791 mRNA_5423 0.23 -0.7
66,480 + 13791 mRNA_5423 0.33 -0.4
66,480 + 13791 mRNA_5423 0.33 1.2
66,555 - 13791 mRNA_5423 0.37 2.2
66,646 + 13791 mRNA_5423 0.41 0.4
66,661 - 13791 mRNA_5423 0.41 -0.9
66,728 - 13791 mRNA_5423 0.44 0.1
66,728 - 13791 mRNA_5423 0.44 1.4
66,731 + 13791 mRNA_5423 0.44 0.5
66,740 + 13791 mRNA_5423 0.45 1.5
66,862 - 13791 mRNA_5423 0.50 -0.1
66,862 + 13791 mRNA_5423 0.50 1.0
66,870 + 13791 mRNA_5423 0.51 -1.4
66,879 - 13791 mRNA_5423 0.51 0.1
66,949 - 13791 mRNA_5423 0.54 0.3
67,058 - 13791 mRNA_5423 0.59 -0.6
67,058 - 13791 mRNA_5423 0.59 0.2
67,058 - 13791 mRNA_5423 0.59 0.7
67,076 + 13791 mRNA_5423 0.60 -0.6
67,080 + 13791 mRNA_5423 0.60 1.7
67,118 + 13791 mRNA_5423 0.62 -0.7
67,225 + 13791 mRNA_5423 0.66 0.4
67,427 - 13791 mRNA_5423 0.75 -0.1
67,459 - 13791 mRNA_5423 0.77 -0.5
67,542 + 13791 mRNA_5423 0.80 -0.2
67,594 + 13791 mRNA_5423 0.83 0.4
67,898 - -1.6
67,981 + -0.5
67,986 - 0.7
68,002 + 0.2
68,037 + -2.9
68,037 + -0.1
68,130 - 2.1
68,130 - 1.0
68,138 - -0.6
68,157 - -1.1
68,158 - 1.0
68,293 + -3.1
68,302 + -0.1
68,327 + 0.5
68,427 - 0.1
68,545 + 1.4
68,574 + 0.3
68,732 + 13792 mRNA_5424 0.13 2.1
68,756 + 13792 mRNA_5424 0.15 0.9
68,756 + 13792 mRNA_5424 0.15 0.6
68,759 - 13792 mRNA_5424 0.15 -0.2
68,895 - 13792 mRNA_5424 0.22 0.7
68,898 + 13792 mRNA_5424 0.22 -0.1
68,901 + 13792 mRNA_5424 0.22 -1.1
68,975 - 13792 mRNA_5424 0.26 -0.2