Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5413

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5412: 13780 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 41309 to 43272 13780 mRNA_5413: 13781 - ProSitePatterns-Protein kinases ATP-binding region signature.-PS00107,ProSiteProfiles-Protein kinase domain profile.-PS50011,SUPERFAMILY--SSF56112, at 43823 to 46039 13781 mRNA_5414: 13782 - HMMPfam-Glycosyl transferase family 2-PF13704, at 46162 to 47875 13782

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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42,928 - 13780 mRNA_5412 0.82 0.6
42,929 + 13780 mRNA_5412 0.82 0.5
43,188 + 1.1
43,313 + 0.1
43,336 + -0.7
43,344 - 0.9
43,544 - 1.1
43,555 + 1.7
43,639 - 0.5
43,669 + 0.2
43,857 - 0.2
43,980 - -1.6
43,985 + 1.3
43,997 + -1.7
44,156 + 13781 mRNA_5413 0.15 2.1
44,206 + 13781 mRNA_5413 0.17 0.9
44,235 - 13781 mRNA_5413 0.19 -0.3
44,237 + 13781 mRNA_5413 0.19 -0.1
44,278 + 13781 mRNA_5413 0.21 -0.0
44,286 + 13781 mRNA_5413 0.21 0.4
44,311 + 13781 mRNA_5413 0.22 -0.1
44,328 + 13781 mRNA_5413 0.23 -1.1
44,449 + 13781 mRNA_5413 0.28 2.0
44,463 - 13781 mRNA_5413 0.29 0.0
44,563 + 13781 mRNA_5413 0.33 0.1
44,578 - 13781 mRNA_5413 0.34 0.3
44,616 - 13781 mRNA_5413 0.36 0.2
44,616 + 13781 mRNA_5413 0.36 0.0
44,660 + 13781 mRNA_5413 0.38 -0.1
44,664 - 13781 mRNA_5413 0.38 2.3
44,690 + 13781 mRNA_5413 0.39 0.3
45,095 - 13781 mRNA_5413 0.57 -0.7
45,095 - 13781 mRNA_5413 0.57 -0.1
45,103 + 13781 mRNA_5413 0.58 -0.0
45,154 - 13781 mRNA_5413 0.60 0.0
45,176 - 13781 mRNA_5413 0.61 0.1
45,275 + 13781 mRNA_5413 0.65 1.6
45,595 + 13781 mRNA_5413 0.80 -0.2
45,623 - 13781 mRNA_5413 0.81 0.5
45,669 - 13781 mRNA_5413 0.83 -0.2
45,678 - 13781 mRNA_5413 0.84 0.3
45,678 - 13781 mRNA_5413 0.84 -1.2
45,684 + 13781 mRNA_5413 0.84 -0.0
45,706 + 13781 mRNA_5413 0.85 0.3
45,709 + 13781 mRNA_5413 0.85 0.6
45,715 - 13781 mRNA_5413 0.85 0.2
45,999 + 0.3
46,007 - -0.3
46,120 - -0.3
46,124 - 0.9
46,132 - 0.8
46,154 - -1.3
46,156 - 0.3
46,446 - 13782 mRNA_5414 0.17 3.0
46,447 + 13782 mRNA_5414 0.17 1.3
46,448 - 13782 mRNA_5414 0.17 1.0
46,540 - 13782 mRNA_5414 0.22 -0.0
46,629 + 13782 mRNA_5414 0.27 0.2
46,671 + 13782 mRNA_5414 0.30 -0.3
46,746 - 13782 mRNA_5414 0.34 -0.1
47,024 + 13782 mRNA_5414 0.50 -1.0