Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5243

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5243: 13611 - KOG1601 GATA-4/5/6 transcription factors, at 247199 to 251043 13611 mRNA_5244: 13612 - HMMPfam-Glycosyl Hydrolase Family 88-PF07470,SUPERFAMILY--SSF48208, at 251965 to 253364 13612

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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246,283 - 0.6
246,293 + -0.4
246,297 + 2.3
246,306 + -0.2
246,447 + 0.7
246,451 + -0.5
246,459 + 0.1
246,477 + 1.7
246,597 - 0.7
246,601 + -0.2
246,608 + -0.2
246,612 - 0.6
246,613 + 0.8
246,613 - 1.9
246,614 + 1.5
246,626 - -0.7
246,630 + -2.7
246,631 - -0.1
246,634 + 0.2
246,636 + -1.2
246,664 + -0.1
246,677 - -1.0
246,719 - -0.0
246,729 + 0.2
246,734 - 2.2
246,736 + -0.8
246,736 + 1.8
246,742 - 0.4
246,750 + 0.2
246,752 + -1.1
246,757 + -0.3
246,878 + 0.8
246,934 + 0.1
246,936 + -0.3
246,957 + -0.3
246,957 - 0.1
246,960 + 0.4
246,961 - 0.2
246,961 + 0.3
246,962 - 0.8
246,963 + 1.7
246,966 + 0.4
246,970 - 1.0
246,971 - -0.5
246,974 - 0.7
246,976 + -0.9
246,984 + 0.6
246,986 - -0.4
246,987 + 0.1
246,988 - 0.9
246,993 + 0.4
246,998 + -0.7
247,082 - -0.2
247,144 + -0.0
247,274 + 0.8
247,287 + -0.7
247,287 + -0.0
247,293 + -0.4
247,426 + -0.6
247,437 - 0.2
247,447 - -0.6
247,574 + -1.5
247,705 + 13611 mRNA_5243 0.13 0.5
248,025 + 13611 mRNA_5243 0.21 0.3
248,229 - 13611 mRNA_5243 0.27 -0.5
248,275 - 13611 mRNA_5243 0.28 0.8
248,450 + 13611 mRNA_5243 0.33 -0.2
248,569 + 13611 mRNA_5243 0.36 -1.7
248,876 + 13611 mRNA_5243 0.44 -2.2
248,906 + 13611 mRNA_5243 0.44 0.3
249,144 - 13611 mRNA_5243 0.51 0.7
249,180 + 13611 mRNA_5243 0.52 0.2
249,324 - 13611 mRNA_5243 0.55 0.4
249,768 + 13611 mRNA_5243 0.67 0.5
250,029 - 13611 mRNA_5243 0.74 1.7
250,367 + 13611 mRNA_5243 0.82 -0.6
250,466 - 13611 mRNA_5243 0.85 -0.4
250,902 - 0.2
251,028 - -0.3
251,062 - -2.1
251,190 - 0.1
251,197 - 0.5
251,216 - 0.0
251,218 + 0.9
251,225 - -0.9
251,231 + -0.2
251,233 - -2.2
251,241 + 0.2
251,351 + 0.5
251,354 - 1.7
251,356 - 0.6
251,356 - -1.2
251,365 - 1.0
251,366 + 1.1
251,368 + 0.3
251,369 - 0.4
251,372 + -0.8
251,372 - 0.3
251,373 + 0.5
251,375 - -1.2
251,388 + -0.1
251,392 + -0.5
251,397 - -0.2
251,412 - 0.4
251,414 + -0.2
251,421 - 0.2
251,423 - 2.1
251,425 + -0.9
251,528 + -0.0
251,535 + -1.0
251,537 - 0.6
251,553 + -0.1
251,560 - -0.1
251,561 - -1.1
251,681 + 1.0
251,685 + -0.7
251,702 + 0.5
251,719 + -0.3
251,753 + 0.6
251,755 - 0.3
251,810 - 0.5
251,827 - 0.3
251,835 + -0.3