Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5045

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5044: 13412 - K04717 SGPP2 sphingosine-1-phosphate phosphotase 2, at 1626185 to 1628118 13412 mRNA_5045: 13413 - K01111 E3.1.3.68 2-deoxyglucose-6-phosphatase, at 1628554 to 1629804 13413 mRNA_5046: 13414 - HMMPfam-Phosphotransferase enzyme family-PF01636,SUPERFAMILY--SSF56112, at 1630371 to 1631224 13414

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,627,960 + 0.4
1,628,020 + 0.3
1,628,089 + -3.0
1,628,158 + 0.9
1,628,296 - -0.4
1,628,306 + 1.3
1,628,311 + -0.5
1,628,320 - 1.8
1,628,444 - -2.1
1,628,444 - 0.7
1,628,446 + -0.8
1,628,449 + -0.1
1,628,449 + -0.3
1,628,449 + -0.7
1,628,453 + 0.2
1,628,454 - -0.6
1,628,455 + 0.3
1,628,458 - 0.4
1,628,596 - 0.6
1,628,603 - 2.1
1,628,610 + -0.6
1,628,635 + 0.1
1,629,029 + 13413 mRNA_5045 0.38 0.1
1,629,334 + 13413 mRNA_5045 0.62 0.9
1,629,491 - 13413 mRNA_5045 0.75 1.8
1,629,787 + -0.2
1,629,899 + -0.6
1,629,918 - 1.1
1,629,936 + 1.0
1,630,193 - -0.2
1,630,341 + 1.6
1,630,351 - -0.1
1,630,362 + 1.2
1,630,633 - 13414 mRNA_5046 0.31 -0.6
1,630,638 + 13414 mRNA_5046 0.31 0.4
1,630,738 - 13414 mRNA_5046 0.43 -1.3
1,630,776 - 13414 mRNA_5046 0.47 -0.8