Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5028

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5028: 13396 - HMMPfam-Cryptococcal mannosyltransferase 1-PF11735, at 1588413 to 1590373 13396 mRNA_5029: 13397 - HMMPfam-Ornithine decarboxylase antizyme-PF02100,SUPERFAMILY--SSF55729, at 1591057 to 1592630 13397

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,587,453 - 0.2
1,587,486 - 0.1
1,587,487 + -1.1
1,587,601 - -2.5
1,587,648 + 1.4
1,587,754 - -0.9
1,587,779 + -0.2
1,587,901 - 1.6
1,587,915 + -0.4
1,587,923 - 0.2
1,587,940 + 0.9
1,588,061 + -0.5
1,588,092 - -1.3
1,588,209 + -2.9
1,588,210 + -1.3
1,588,225 + 0.2
1,588,225 + -0.4
1,588,365 + 1.5
1,588,365 - -0.9
1,588,522 - -0.6
1,588,523 + -0.1
1,588,554 - 1.9
1,588,557 + 0.2
1,588,707 - 13396 mRNA_5028 0.15 0.2
1,588,816 - 13396 mRNA_5028 0.21 -0.4
1,588,822 - 13396 mRNA_5028 0.21 0.6
1,588,983 + 13396 mRNA_5028 0.29 -0.4
1,589,251 - 13396 mRNA_5028 0.43 -0.0
1,590,185 + 0.1
1,590,630 - 0.3
1,590,767 - -0.1
1,590,958 - -1.9
1,591,216 + 13397 mRNA_5029 0.10 1.7