Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_5008

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_5008: 13376 - KOG2319 Vacuolar assembly/sorting protein VPS9, at 1530347 to 1531248 13376 mRNA_5009: 13377 - K07195 EXOC7, EXO70 exocyst complex component 7, at 1531296 to 1533936 13377

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,529,629 + -1.7
1,529,801 - 0.7
1,529,810 + 0.0
1,529,876 - 0.1
1,529,925 - 0.1
1,529,950 + 0.1
1,529,956 + -2.0
1,529,957 - -1.7
1,529,958 - 0.8
1,529,961 - 0.4
1,529,961 + -0.4
1,529,963 + 0.2
1,529,967 - -0.5
1,529,971 + 1.3
1,529,976 - -3.2
1,529,978 - -0.0
1,529,980 - -1.2
1,529,983 + 0.4
1,529,993 + 0.3
1,530,005 - 0.0
1,530,089 + -0.5
1,530,095 - -0.3
1,530,096 - 0.1
1,530,102 - 0.8
1,530,103 + 0.9
1,530,107 + 0.9
1,530,126 + -1.1
1,530,159 - -0.3
1,530,161 - -1.1
1,530,168 - 1.3
1,530,169 - 0.2
1,530,170 - 0.2
1,530,188 + 1.1
1,530,300 - -0.2
1,530,306 + 0.8
1,530,446 - 13376 mRNA_5008 0.11 1.1
1,530,585 - 13376 mRNA_5008 0.26 -0.8
1,530,603 + 13376 mRNA_5008 0.28 -0.9
1,531,028 + 13376 mRNA_5008 0.75 0.2
1,531,043 + 13376 mRNA_5008 0.77 -0.7
1,531,050 + 13376 mRNA_5008 0.78 0.2
1,531,176 - 0.8
1,531,455 - 1.0
1,531,459 - 0.7
1,532,062 - 13377 mRNA_5009 0.29 -0.2
1,532,174 - 13377 mRNA_5009 0.33 0.1
1,532,185 + 13377 mRNA_5009 0.34 -0.9
1,532,191 - 13377 mRNA_5009 0.34 -0.2
1,532,219 - 13377 mRNA_5009 0.35 2.0