Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4952

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4951: 13319 - K15114 ORT1 mitochondrial ornithine carrier protein, at 1386177 to 1387405 13319 mRNA_4952: 13320 - BLAST Tetratricopeptide-like helical [Xanthophyllomyces den..., at 1387683 to 1389449 13320 mRNA_4953: 13321 - HMMPfam-Pyridoxamine 5'-phosphate oxidase-PF01243,SUPERFAMILY--SSF50475, at 1389640 to 1390956 13321

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,387,116 - 13319 mRNA_4951 0.76 0.2
1,387,245 + 13319 mRNA_4951 0.87 -2.0
1,387,315 + -1.6
1,387,533 + 0.9
1,387,685 - -0.4
1,387,713 - 0.5
1,388,590 - 13320 mRNA_4952 0.51 -0.5
1,389,066 + 13320 mRNA_4952 0.78 1.1
1,389,179 - 13320 mRNA_4952 0.85 0.3
1,389,182 - 13320 mRNA_4952 0.85 -1.5
1,389,188 + 13320 mRNA_4952 0.85 1.6
1,389,318 - 0.1
1,389,338 + 1.3
1,389,338 + 1.0
1,389,478 + -0.3
1,389,504 + -0.8
1,389,509 - -0.8
1,389,510 - 0.4
1,389,533 - -0.2
1,389,543 - -0.8
1,389,546 - -0.8
1,389,552 + 0.3
1,389,560 - -0.5
1,389,560 - -0.9
1,389,562 - 0.2
1,389,563 + -0.7
1,389,566 - -0.2
1,389,568 + -1.3
1,389,570 + -0.3
1,389,572 - 0.0
1,389,575 + 1.6
1,389,580 - 1.0
1,389,678 - -0.3
1,389,702 - 1.1
1,389,703 + 0.7
1,389,712 - 0.3
1,389,712 - 0.2
1,389,713 + -0.0
1,389,714 + 0.3
1,389,720 + -0.2
1,389,725 + 0.7
1,389,729 + -0.1
1,389,734 - -0.0
1,389,742 - -0.1
1,389,748 + 0.2
1,389,855 + 13321 mRNA_4953 0.16 -0.1
1,389,893 + 13321 mRNA_4953 0.19 -0.4
1,390,027 - 13321 mRNA_4953 0.29 -0.4
1,390,029 - 13321 mRNA_4953 0.30 0.1
1,390,043 - 13321 mRNA_4953 0.31 0.4
1,390,175 + 13321 mRNA_4953 0.41 0.3
1,390,192 + 13321 mRNA_4953 0.42 -1.4
1,390,305 - 13321 mRNA_4953 0.50 -1.3
1,390,419 + 13321 mRNA_4953 0.59 0.4