Strain Fitness in Rhodosporidium toruloides IFO0880 around mRNA_4938

Experiments: YNB Glucose

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey).

500 nt mRNA_4937: 13305 - HMMPfam-Single-strand binding protein family-PF00436,ProSiteProfiles-Single-strand binding (SSB) domain profile.-PS50935,SUPERFAMILY--SSF50249, at 1362763 to 1363546 13305 mRNA_4938: 13306 - HMMPfam-Protein of unknown function (DUF1749)-PF08538,SUPERFAMILY--SSF53474, at 1364242 to 1365196 13306 mRNA_4939: 13307 - HMMPfam-RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)-PF00076,ProSiteProfiles-Eukaryotic RNA Recognition Motif (RRM) profile.-PS50102,SMART-RNA recognition motif-SM00360,SUPERFAMILY--SSF54928, at 1365348 to 1366647 13307

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Per-strain Table

Position Strand Gene Sysname Fraction YNB Glucose
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1,363,482 - -0.7
1,363,613 + 1.1
1,363,768 - -1.2
1,363,785 - -1.2
1,363,787 + 0.3
1,363,788 - -0.1
1,363,792 - -0.2
1,363,795 + 1.4
1,363,797 - 0.7
1,363,797 - 0.4
1,363,805 - 1.3
1,363,806 - -1.0
1,364,222 + 0.9
1,364,230 + -1.9
1,364,390 + 13306 mRNA_4938 0.15 -0.4
1,364,676 + 13306 mRNA_4938 0.45 -0.4
1,364,680 - 13306 mRNA_4938 0.46 -0.3
1,364,839 + 13306 mRNA_4938 0.63 1.2
1,365,091 + 13306 mRNA_4938 0.89 1.0
1,365,100 - 13306 mRNA_4938 0.90 1.0
1,365,115 + 0.8
1,365,161 + -1.4
1,365,273 - 0.6
1,365,385 - 0.3
1,365,394 + 0.8
1,365,549 + 13307 mRNA_4939 0.15 -0.0
1,365,831 + 13307 mRNA_4939 0.37 2.4
1,365,882 - 13307 mRNA_4939 0.41 -0.4
1,365,975 - 13307 mRNA_4939 0.48 -0.9
1,366,128 - 13307 mRNA_4939 0.60 0.2
1,366,152 - 13307 mRNA_4939 0.62 -0.9